Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC007485.1-201ENST00000616755 206 ntBASIC6.03□□□□□ -1.44
CHMP3Q9Y3E7 CCL14-204ENST00000622526 472 ntTSL 3 BASIC6.03□□□□□ -1.44
CHMP3Q9Y3E7 AC025034.2-201ENST00000623264 286 ntBASIC6.03□□□□□ -1.44
CHMP3Q9Y3E7 AC022418.1-201ENST00000624118 445 ntBASIC6.03□□□□□ -1.44
CHMP3Q9Y3E7 U6.114-201ENST00000636407 96 ntBASIC6.03□□□□□ -1.44
CHMP3Q9Y3E7 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
CHMP3Q9Y3E7 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC6.03□□□□□ -1.44
CHMP3Q9Y3E7 AL049641.1-201ENST00000441055 1948 ntBASIC6.03□□□□□ -1.44
CHMP3Q9Y3E7 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AL731532.2-201ENST00000623542 1953 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 Y_RNA.47-201ENST00000362697 108 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 Y_RNA.158-201ENST00000363651 101 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 SNORD115-7-201ENST00000365306 82 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 SNORA24.1-201ENST00000384401 135 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 RNU6-601P-201ENST00000384540 107 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 Y_RNA.557-201ENST00000384680 107 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 MRPL42P3-201ENST00000401492 326 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AL136372.1-201ENST00000403060 228 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AL139397.2-201ENST00000404529 772 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 RNU6-954P-201ENST00000411355 107 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 MCFD2P1-201ENST00000417812 300 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AL139396.1-201ENST00000421137 167 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC093106.2-201ENST00000428212 385 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC092162.1-201ENST00000432828 434 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC005154.2-201ENST00000438110 379 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 RPL12P20-201ENST00000475538 479 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 RPL21P93-201ENST00000480465 489 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 RPL30P11-201ENST00000495304 339 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 FAM60DP-201ENST00000524174 632 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AL137161.1-201ENST00000532231 390 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 PYM1-205ENST00000547925 499 ntTSL 3 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 uc_338.11-201ENST00000619132 160 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AP000346.3-201ENST00000622821 210 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 CR381572.2-201ENST00000624852 397 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 THAP12P5-201ENST00000405864 2275 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 AC104623.2-202ENST00000623477 4002 ntBASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
CHMP3Q9Y3E7 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 AL022322.2-201ENST00000624072 20397 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 AC009643.2-201ENST00000603543 1448 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 AC117470.1-201ENST00000381974 330 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 Y_RNA.527-201ENST00000384573 102 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 Y_RNA.576-201ENST00000384781 102 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 RNU1-82P-201ENST00000390851 165 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 RNU6-278P-201ENST00000390945 109 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 RNU2-15P-201ENST00000410692 191 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 RN7SKP106-201ENST00000410832 272 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 POLHP1-201ENST00000411806 470 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 AC009310.1-201ENST00000414414 451 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 BX510359.2-201ENST00000417920 305 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 AC127537.2-201ENST00000439258 465 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 FHP1-201ENST00000442741 703 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 H2AFZP6-201ENST00000444403 394 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 MTND1P17-201ENST00000448961 204 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 TPT1P13-201ENST00000449760 499 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 AL591623.2-201ENST00000449978 222 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 RN7SL283P-201ENST00000489055 303 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 AC091868.1-201ENST00000508746 304 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 RNU6-764P-201ENST00000516396 105 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 HMGB1P19-201ENST00000517578 577 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 AC009902.1-201ENST00000519351 183 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 DEFB109D-201ENST00000529497 240 ntBASIC6.01□□□□□ -1.45
CHMP3Q9Y3E7 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms