Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AC112198.2-201ENST00000426589 6996 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AL451142.2-201ENST00000429076 2090 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 RNU6-179P-201ENST00000363350 107 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 RNU6-522P-201ENST00000364497 107 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 RNA5SP366-201ENST00000365454 123 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 RNU6-1029P-201ENST00000384109 107 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 RNU6-1297P-201ENST00000384415 104 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AL022722.2-201ENST00000402519 180 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AL136372.1-201ENST00000403060 228 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 MIR548P-201ENST00000408336 84 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 RPS17P13-201ENST00000448974 407 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 snoU109.4-201ENST00000458953 143 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 SNORA67.7-201ENST00000516664 135 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 NARSP2-201ENST00000518524 679 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 OR5B10P-201ENST00000532869 642 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 RN7SL176P-201ENST00000580352 264 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 MIR4660-201ENST00000583549 74 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AL451044.1-201ENST00000604867 238 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 MTND5P3-201ENST00000438536 1800 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AP001350.1-201ENST00000601906 1524 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 AC005005.4-201ENST00000623789 16698 ntBASIC5.82□□□□□ -1.48
CCDC87Q9NVE4 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 MIR670-201ENST00000390142 98 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 AL583835.1-201ENST00000399570 407 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 RNU6-628P-201ENST00000410675 107 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 AC068533.1-201ENST00000418542 415 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 E2F6P2-201ENST00000420708 748 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 RPS12P5-201ENST00000423449 371 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 SNORD97-201ENST00000459187 142 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 RNU7-180P-201ENST00000459240 63 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 AC130509.1-201ENST00000464158 433 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 RNU6-27P-201ENST00000516146 107 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 SNORA25.17-201ENST00000517184 124 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 FTH1P11-201ENST00000517577 551 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 AC023632.4-201ENST00000517783 191 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 MTND4P7-201ENST00000523876 130 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 MIR4716-201ENST00000579628 84 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 MIR3158-1-201ENST00000583596 81 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 uc_338.15-201ENST00000615470 191 ntBASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
CCDC87Q9NVE4 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 MFSD8-242ENST00000641690 4199 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AC006971.1-201ENST00000407916 4486 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 SNORA4.3-201ENST00000365564 137 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 Y_RNA.414-201ENST00000384011 101 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms