Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RPL7P54-201ENST00000438336 674 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 PPIAP3-201ENST00000450588 505 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 FDX1P2-201ENST00000450769 375 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AL162388.1-201ENST00000450912 352 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC007967.1-201ENST00000455422 1159 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AL049714.1-201ENST00000466686 347 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 RPS29P19-201ENST00000479709 171 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC114797.1-201ENST00000514003 728 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 RNU6-1281P-201ENST00000516223 105 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 RNU4-60P-201ENST00000517239 135 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AL121579.1-201ENST00000555129 305 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AL359212.1-201ENST00000556608 614 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 OR4K8P-201ENST00000578842 1048 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 DUXAP9-208ENST00000622815 614 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 AC006065.5-201ENST00000623427 349 ntBASIC4.37□□□□□ -1.71
TDP1Q9NUW8 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
TDP1Q9NUW8 MTCO1P9-201ENST00000505577 1534 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AC244517.1-201ENST00000606030 2086 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 RNU6-1249P-201ENST00000363237 111 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 Y_RNA.381-201ENST00000365666 102 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 RNU6-278P-201ENST00000390945 109 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 RNU6-516P-201ENST00000411381 104 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 RPL30P16-201ENST00000419341 429 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 RPS12P23-201ENST00000419579 400 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AF213884.1-201ENST00000488102 463 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 RN7SL604P-201ENST00000492589 296 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AC020593.1-201ENST00000507399 299 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 HMGB3P26-201ENST00000560051 582 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AC098848.2-201ENST00000588023 330 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 GLUD1P4-201ENST00000590914 418 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 MIR6875-201ENST00000617506 72 ntBASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TDP1Q9NUW8 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 RNU5E-8P-201ENST00000363502 116 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 RNU6-39P-201ENST00000384344 107 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 MIR1-2-201ENST00000384961 85 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 SNORD66.1-201ENST00000391230 76 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 149.5 ms