Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
USP44Q9H0E7 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
USP44Q9H0E7 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
USP44Q9H0E7 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC092447.10-201ENST00000620607 1652 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
USP44Q9H0E7 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
USP44Q9H0E7 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP44Q9H0E7 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP44Q9H0E7 SNORA51.2-201ENST00000364595 132 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 SNORD116-8-201ENST00000384365 95 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 MIR607-201ENST00000385241 96 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 RNU4-72P-201ENST00000410754 173 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 MTCO1P27-201ENST00000448269 226 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 ELOCP23-201ENST00000452014 332 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC106872.3-201ENST00000495104 446 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 RPF2P2-201ENST00000504693 896 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 MTND5P4-201ENST00000514978 288 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 RN7SKP57-201ENST00000517248 293 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC092851.1-201ENST00000535964 478 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC008088.1-201ENST00000580993 280 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC004223.4-201ENST00000612426 332 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC048344.4-201ENST00000619744 527 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 MIR8057-201ENST00000620957 69 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC009039.2-201ENST00000624524 529 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 AC099063.3-201ENST00000642066 185 ntBASIC4.03□□□□□ -1.76
USP44Q9H0E7 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP44Q9H0E7 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC007496.3-201ENST00000624987 3443 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
USP44Q9H0E7 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
USP44Q9H0E7 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 Y_RNA.302-201ENST00000364997 102 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 U3.19-201ENST00000390893 196 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 RAD23BP2-201ENST00000416003 1207 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 USP9YP26-201ENST00000421008 661 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 CST9LP2-201ENST00000437612 320 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 RPS20P32-201ENST00000456044 356 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC109925.1-201ENST00000478069 331 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC022447.3-201ENST00000506865 495 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 POU5F1P7-201ENST00000508759 541 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 RNU6-1095P-201ENST00000516148 108 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC024224.1-201ENST00000538284 609 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC008507.1-201ENST00000587506 734 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC012493.2-201ENST00000595083 291 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC004853.1-201ENST00000604902 698 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC097065.2-201ENST00000608159 533 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 AL713922.2-201ENST00000619384 716 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 AC018692.3-201ENST00000623929 123 ntBASIC4.02□□□□□ -1.77
USP44Q9H0E7 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP44Q9H0E7 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
USP44Q9H0E7 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP44Q9H0E7 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
USP44Q9H0E7 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP44Q9H0E7 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP44Q9H0E7 RNY4P24-201ENST00000362735 96 ntBASIC4.01□□□□□ -1.77
USP44Q9H0E7 SNORA7.4-201ENST00000384249 137 ntBASIC4.01□□□□□ -1.77
USP44Q9H0E7 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
USP44Q9H0E7 AL138880.1-201ENST00000405824 642 ntBASIC4.01□□□□□ -1.77
USP44Q9H0E7 Z98941.1-201ENST00000407764 100 ntBASIC4.01□□□□□ -1.77
USP44Q9H0E7 RNU6-712P-201ENST00000410558 100 ntBASIC4.01□□□□□ -1.77
USP44Q9H0E7 AL137014.1-201ENST00000420490 1226 ntBASIC4.01□□□□□ -1.77
USP44Q9H0E7 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.01□□□□□ -1.77
USP44Q9H0E7 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC4.01□□□□□ -1.77
USP44Q9H0E7 EEF1E1P1-201ENST00000446998 430 ntBASIC4.01□□□□□ -1.77
USP44Q9H0E7 AC002381.1-201ENST00000447049 280 ntBASIC4.01□□□□□ -1.77
USP44Q9H0E7 AL353691.1-201ENST00000451332 387 ntBASIC4.01□□□□□ -1.77
USP44Q9H0E7 RPS24P6-201ENST00000452670 400 ntBASIC4.01□□□□□ -1.77
USP44Q9H0E7 BX322784.1-201ENST00000455793 1077 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms