Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MTND2P22-201ENST00000444325 1033 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 SYPL1P1-201ENST00000473622 768 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 RPS3AP43-201ENST00000479743 781 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 RPL23AP55-201ENST00000498163 452 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 OR5H5P-201ENST00000503164 928 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 TMEM251P1-201ENST00000503717 318 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC005178.1-201ENST00000508392 440 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC136618.2-201ENST00000575091 400 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AL590392.1-201ENST00000604960 446 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC124312.4-201ENST00000605533 310 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AL451086.1-201ENST00000605596 223 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC107871.2-201ENST00000612894 502 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 MIR6758-201ENST00000620653 63 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AL590240.3-201ENST00000621416 943 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AL392088.2-201ENST00000637607 285 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC099063.3-201ENST00000642066 185 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AP002907.1-201ENST00000606361 1430 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AL359893.1-201ENST00000447628 1580 ntBASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
CCDC28BQ9BUN5 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AL356473.1-201ENST00000406203 1408 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 FAM35BP-202ENST00000497389 3337 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 RPL21P132-201ENST00000331267 462 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 RPL23AP57-201ENST00000332361 466 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC083875.1-201ENST00000419509 405 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC244098.2-201ENST00000422068 99 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 ZYG11AP1-201ENST00000430329 837 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 VDAC1P3-201ENST00000434069 851 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 LTV1P1-201ENST00000510683 1237 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 OR5BM1P-201ENST00000512021 366 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 NPM1P41-201ENST00000512920 831 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 GMPSP1-201ENST00000514075 579 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC087373.1-201ENST00000524920 491 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC007448.1-201ENST00000582714 234 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC010738.1-201ENST00000604970 987 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AL627309.6-201ENST00000606857 840 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 U3.45-201ENST00000607547 219 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC090116.1-201ENST00000615679 446 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 PCMTD1P7-201ENST00000634506 357 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC28BQ9BUN5 AC004925.1-201ENST00000624256 2706 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 RNU4-40P-201ENST00000364351 143 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 RNA5SP88-201ENST00000365560 109 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 RNU6-878P-201ENST00000384578 110 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 RPL21P17-201ENST00000397467 475 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 AL031577.2-201ENST00000404133 280 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 SNORD88.1-201ENST00000408684 91 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 AL035410.1-201ENST00000427409 427 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 CKS1BP5-201ENST00000434172 273 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 SNRPEP7-201ENST00000438350 220 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 AL590399.6-201ENST00000446396 307 ntBASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC28BQ9BUN5 RNU7-136P-201ENST00000458819 69 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms