Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL161912.2-201ENST00000565707 3007 ntBASIC4.03□□□□□ -1.77
PAAF1Q9BRP4 AL136964.1-201ENST00000622038 2990 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AL356489.2-201ENST00000566968 3528 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 Y_RNA.41-201ENST00000362646 102 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 Y_RNA.296-201ENST00000364930 108 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC127391.1-201ENST00000411737 98 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 HMGN1P24-201ENST00000412282 298 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 CRYBB2P1-203ENST00000415709 538 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC233728.2-201ENST00000425348 757 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AL589872.1-201ENST00000426602 288 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 HSPD1P21-201ENST00000436541 245 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 USP9YP15-201ENST00000442391 422 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 RAC1P7-201ENST00000445367 377 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 NANOGNBP1-201ENST00000448444 480 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AL451050.1-201ENST00000450126 415 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 MTCO3P20-201ENST00000454926 688 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 RPL9P33-201ENST00000484311 566 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 RNA5SP164-201ENST00000516533 110 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 RNU6-798P-201ENST00000516912 103 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 RNU6-430P-201ENST00000517078 107 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 HMGB1P19-201ENST00000517578 577 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC103783.1-201ENST00000520506 373 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AL391840.1-201ENST00000571144 367 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 UBE2L4-201ENST00000587688 464 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AL161729.4-201ENST00000604650 476 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AL355472.4-201ENST00000610233 626 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 BX664608.1-201ENST00000610519 487 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AL133173.2-201ENST00000614270 90 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 LINC00901.1-201ENST00000617252 152 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC012314.7-201ENST00000619693 93 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AC138649.3-201ENST00000622154 254 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AL158801.5-201ENST00000623123 465 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 AL159972.1-201ENST00000625150 448 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 UBE3AP2-201ENST00000429033 2259 ntBASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
PAAF1Q9BRP4 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 MAPK10-372ENST00000641954 3413 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 U8.3-201ENST00000363321 132 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 SNORD46.1-201ENST00000364139 104 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 RNU6-1279P-201ENST00000383917 103 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 Y_RNA.548-201ENST00000384656 105 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 RPS29P4-201ENST00000414733 161 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 CCDC58P2-201ENST00000417131 366 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 OR4K11P-201ENST00000431829 904 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC009961.2-201ENST00000435771 251 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AL049734.2-201ENST00000441066 616 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 MTND1P1-201ENST00000445453 368 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 RPL7P49-201ENST00000471402 708 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC055855.1-201ENST00000489563 579 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 MTCO2P4-201ENST00000517968 247 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC016957.1-201ENST00000534895 309 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AL158211.4-201ENST00000606988 584 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC128687.2-201ENST00000609657 566 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC013476.2-201ENST00000614456 459 ntBASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.01□□□□□ -1.77
PAAF1Q9BRP4 AC068137.3-201ENST00000639191 341 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms