Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 KATNBL1P3-201ENST00000443475 909 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 UBDP1-202ENST00000457888 382 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 ST13P14-201ENST00000474095 734 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC092451.1-201ENST00000480211 153 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC021382.1-201ENST00000483523 359 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 RPL31P13-201ENST00000484151 370 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 SAP18P1-201ENST00000512058 390 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 RNU2-58P-201ENST00000516403 183 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 SNORA31.20-201ENST00000517111 133 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AP004371.1-201ENST00000525240 214 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 MTND4LP18-201ENST00000526864 291 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 HSPE1P5-201ENST00000561489 272 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC092354.2-201ENST00000607786 514 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC012360.2-201ENST00000609349 391 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC079597.1-201ENST00000624306 508 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC025048.6-202ENST00000627667 438 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 CRYM-AS1-204ENST00000637983 556 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 RIOK3P1-201ENST00000418778 1528 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AL390237.1-201ENST00000404226 1415 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC021755.1-201ENST00000559747 1447 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC092125.1-201ENST00000562568 1995 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 MTND5P33-201ENST00000571250 1450 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 RNU5E-5P-201ENST00000365379 116 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 RNU6-114P-201ENST00000384704 105 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 RPS20P2-201ENST00000402520 389 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AL136116.1-201ENST00000403591 381 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC078974.1-201ENST00000411597 223 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 RAD23BP2-201ENST00000416003 1207 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 EI24P1-201ENST00000416584 867 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AL139247.1-201ENST00000422768 325 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 MTCO1P19-201ENST00000443487 500 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 COX6CP2-201ENST00000444980 225 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 MTND1P29-201ENST00000448112 647 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 SNORD121B-201ENST00000458838 81 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 OR9M1P-201ENST00000459641 921 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 RN7SL542P-201ENST00000467147 294 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 MTND4LP3-201ENST00000468320 276 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC010285.1-201ENST00000470580 392 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC084357.1-201ENST00000473404 255 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 RN7SL323P-201ENST00000494712 295 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 FCF1P3-201ENST00000496394 590 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC026784.1-201ENST00000507986 352 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 RNA5SP164-201ENST00000516533 110 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 MTCYBP41-201ENST00000528913 1123 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 NBR2-204ENST00000587322 63 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC083760.1-201ENST00000589621 670 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 RSL24D1P11-201ENST00000591045 491 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 AL031176.1-201ENST00000604554 466 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 RN7SKP299-201ENST00000606679 301 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AL391813.2-201ENST00000609113 322 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC002550.2-201ENST00000621246 394 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC012150.2-201ENST00000621300 544 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 147 ms