Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.32□□□□□ -2.04
LMX1AQ8TE12 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC2.32□□□□□ -2.04
LMX1AQ8TE12 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC2.32□□□□□ -2.04
LMX1AQ8TE12 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC2.32□□□□□ -2.04
LMX1AQ8TE12 AC095057.3-201ENST00000567102 1157 ntBASIC2.32□□□□□ -2.04
LMX1AQ8TE12 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.32□□□□□ -2.04
LMX1AQ8TE12 MIR4648-201ENST00000580107 72 ntBASIC2.32□□□□□ -2.04
LMX1AQ8TE12 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC2.32□□□□□ -2.04
LMX1AQ8TE12 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.32□□□□□ -2.04
LMX1AQ8TE12 DUXAP4-201ENST00000603046 613 ntBASIC2.32□□□□□ -2.04
LMX1AQ8TE12 AC104763.2-201ENST00000604179 382 ntBASIC2.32□□□□□ -2.04
LMX1AQ8TE12 DPRXP5-201ENST00000604662 539 ntBASIC2.32□□□□□ -2.04
LMX1AQ8TE12 AC008962.1-201ENST00000605729 304 ntBASIC2.32□□□□□ -2.04
LMX1AQ8TE12 AC006213.5-201ENST00000619673 288 ntBASIC2.32□□□□□ -2.04
LMX1AQ8TE12 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LMX1AQ8TE12 MTCO1P6-201ENST00000481192 1384 ntBASIC2.32□□□□□ -2.04
LMX1AQ8TE12 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LMX1AQ8TE12 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.32□□□□□ -2.04
LMX1AQ8TE12 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 RNA5SP432-201ENST00000362480 116 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 RNU6-792P-201ENST00000363490 107 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 SNORA41-201ENST00000384675 132 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AL158050.1-201ENST00000416077 457 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 PAICSP7-201ENST00000419829 962 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 HMGB3P12-201ENST00000438745 556 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 RPS26P30-201ENST00000443431 335 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 FDX1P2-201ENST00000450769 375 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 RPL23AP49-201ENST00000492925 468 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC004062.1-201ENST00000509926 645 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 RNU6-1102P-201ENST00000516149 96 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 RNU6-56P-201ENST00000516986 93 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 HIGD1AP6-201ENST00000521833 279 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AP001317.1-201ENST00000531194 960 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 LINC00557-201ENST00000563184 1279 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC061975.8-201ENST00000587058 721 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 ZNF92P2-201ENST00000600543 1059 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 BNIP3P4-201ENST00000604946 565 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC131902.3-201ENST00000611767 581 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 MIR6873-201ENST00000622788 63 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AP006248.3-201ENST00000623580 594 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AP000676.4-201ENST00000624659 623 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 AC068620.4-201ENST00000636730 1182 ntBASIC2.31□□□□□ -2.04
LMX1AQ8TE12 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.31□□□□□ -2.04
LMX1AQ8TE12 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.3□□□□□ -2.04
LMX1AQ8TE12 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC2.3□□□□□ -2.04
LMX1AQ8TE12 RNU6-1226P-201ENST00000384317 107 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 Y_RNA.493-201ENST00000384422 102 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 RN7SKP140-201ENST00000411196 284 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC2.3□□□□□ -2.04
LMX1AQ8TE12 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
LMX1AQ8TE12 BTBD7P2-201ENST00000441962 620 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.3□□□□□ -2.04
LMX1AQ8TE12 RPL21P47-201ENST00000483696 477 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 AP000873.5-201ENST00000533906 236 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 ELOCP31-201ENST00000540463 467 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.3□□□□□ -2.04
LMX1AQ8TE12 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.3□□□□□ -2.04
LMX1AQ8TE12 AP004247.3-201ENST00000608682 624 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 RMST_10.1-201ENST00000616309 154 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 AL360181.4-201ENST00000621752 134 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 MIR7843-201ENST00000622274 79 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 AC079228.1-201ENST00000624774 1049 ntBASIC2.3□□□□□ -2.04
LMX1AQ8TE12 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC2.3□□□□□ -2.04
LMX1AQ8TE12 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LMX1AQ8TE12 AC016717.2-201ENST00000609089 5141 ntBASIC2.29□□□□□ -2.04
LMX1AQ8TE12 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.29□□□□□ -2.04
LMX1AQ8TE12 AC090740.1-201ENST00000623193 2262 ntBASIC2.29□□□□□ -2.04
LMX1AQ8TE12 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.29□□□□□ -2.04
LMX1AQ8TE12 MTND5P31-201ENST00000419366 1374 ntBASIC2.29□□□□□ -2.04
LMX1AQ8TE12 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
LMX1AQ8TE12 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
LMX1AQ8TE12 RNU6-1027P-201ENST00000383998 107 ntBASIC2.29□□□□□ -2.04
LMX1AQ8TE12 RNU6-77P-201ENST00000410554 91 ntBASIC2.29□□□□□ -2.04
LMX1AQ8TE12 SSXP9-201ENST00000417503 292 ntBASIC2.29□□□□□ -2.04
LMX1AQ8TE12 AC009237.2-201ENST00000421358 284 ntBASIC2.29□□□□□ -2.04
LMX1AQ8TE12 AL009174.1-201ENST00000426577 416 ntBASIC2.29□□□□□ -2.04
LMX1AQ8TE12 AC114973.1-201ENST00000429057 632 ntBASIC2.29□□□□□ -2.04
LMX1AQ8TE12 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.29□□□□□ -2.04
LMX1AQ8TE12 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms