Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL136097.1-201ENST00000456945 913 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC023141.9-201ENST00000458734 412 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 RPL21P104-201ENST00000464143 478 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 VN1R17P-201ENST00000472048 1090 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC069499.1-201ENST00000489433 509 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC108693.1-201ENST00000496068 432 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 RPS4XP20-201ENST00000505751 772 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC116562.3-201ENST00000506136 177 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC068587.5-201ENST00000528506 175 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC109635.3-201ENST00000529536 185 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC104383.1-201ENST00000530297 370 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AP001596.2-201ENST00000608410 312 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AL356321.1-201ENST00000621360 228 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AL353662.3-201ENST00000625131 237 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 BDP1P-201ENST00000582658 1990 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 MTND5P17-201ENST00000418405 1603 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 RNA5SP234-201ENST00000363916 119 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 MIR454-201ENST00000390180 115 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 SNORA77-201ENST00000408716 125 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 RN7SKP206-201ENST00000410823 293 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 RN7SKP100-201ENST00000411258 284 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 MRPL50P2-201ENST00000416821 482 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 USP9YP27-201ENST00000418455 438 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 SDCBPP3-201ENST00000419629 891 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 RPL21P91-201ENST00000429231 479 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC000111.3-201ENST00000433478 193 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 BNIP3P2-201ENST00000441221 577 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 TXNP1-201ENST00000441872 371 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AL356010.1-201ENST00000456364 102 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 RPS20P20-201ENST00000460498 340 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 RN7SL184P-201ENST00000488308 297 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AL049874.1-201ENST00000489560 388 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC109927.2-201ENST00000506416 303 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 Y_RNA.704-201ENST00000516851 102 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 RN7SKP258-201ENST00000517151 304 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-1231P-201ENST00000517185 103 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC012339.2-201ENST00000523996 453 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 OR5BN1P-201ENST00000532955 829 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AL109766.1-201ENST00000555080 552 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC090888.3-201ENST00000558917 509 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 RPL10P14-201ENST00000565265 298 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 SNORD95-201ENST00000579879 68 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC006504.3-201ENST00000586818 523 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC093788.1-201ENST00000609356 927 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AC007014.2-201ENST00000615581 479 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 AL589994.2-201ENST00000621124 579 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 MIR1321-201ENST00000637766 79 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 PRO1804-201ENST00000623780 2050 ntBASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC28AQ8IWP9 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-50P-201ENST00000362356 103 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-179P-201ENST00000363350 107 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RNA5SP242-201ENST00000364171 118 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 Y_RNA.256-201ENST00000364594 104 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RN7SKP15-201ENST00000364742 309 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-701P-201ENST00000384059 107 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 Y_RNA.453-201ENST00000384223 109 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 Y_RNA.573-201ENST00000384763 105 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 MIR514A1-201ENST00000385133 98 ntBASIC3.79□□□□□ -1.8
CCDC28AQ8IWP9 RNA5SP339-201ENST00000390987 122 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms