Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC119751.7-201ENST00000600494 245 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AL031176.1-201ENST00000604554 466 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC128687.1-201ENST00000605304 619 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC080013.6-201ENST00000606185 215 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC091965.4-201ENST00000607691 587 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC245008.1-201ENST00000608123 476 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 MIR486-1-201ENST00000612171 68 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC093591.3-201ENST00000634516 308 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AP003399.1-201ENST00000637534 361 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AL021368.2-201ENST00000606125 5352 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC021755.1-201ENST00000559747 1447 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 OR11H4-201ENST00000315409 1082 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 Y_RNA.97-201ENST00000363094 102 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 Z99497.1-201ENST00000421282 135 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC079780.1-201ENST00000428259 207 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 RPL37P21-201ENST00000435890 276 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 RSU1P2-202ENST00000437884 485 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC091862.1-201ENST00000438016 1100 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 THAP5P1-201ENST00000439089 262 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 TRIM60P18-201ENST00000441518 828 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 BMI1P1-201ENST00000445879 941 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 RPL31P3-201ENST00000458430 332 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 UBE2DNL-203ENST00000474922 222 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC021678.1-201ENST00000505195 936 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 TXNP6-201ENST00000510190 310 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 OR5BM1P-201ENST00000512021 366 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 Y_RNA.695-201ENST00000516715 107 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC068587.4-201ENST00000533893 186 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 CR383656.7-201ENST00000548164 174 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AL163153.1-201ENST00000554223 283 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 MIR4307-201ENST00000582802 84 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AP001029.3-201ENST00000588063 596 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC015726.1-201ENST00000602353 681 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AP001981.2-201ENST00000603241 418 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC135507.1-201ENST00000607214 561 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AL390240.1-201ENST00000612950 384 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AL158063.1-201ENST00000615349 536 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 AC092125.1-201ENST00000562568 1995 ntBASIC3.29□□□□□ -1.88
PDLIM3Q53GG5 UBE3AP2-201ENST00000429033 2259 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 FRG1BP-201ENST00000278882 761 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 RPL7P26-201ENST00000333817 754 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 RNA5SP432-201ENST00000362480 116 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 RNU6-769P-201ENST00000384407 104 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 CCNG1P1-201ENST00000406783 885 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 RNA5SP36-201ENST00000410197 133 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 RN7SKP266-201ENST00000410232 287 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 RN7SKP142-201ENST00000411236 328 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 CYCSP46-201ENST00000423569 204 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 OR4K11P-201ENST00000431829 904 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC098826.1-201ENST00000433943 471 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 KCTD9P3-201ENST00000434597 1169 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 FAM103A2P-201ENST00000444122 354 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 AC073387.1-201ENST00000453261 709 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 Z82190.1-201ENST00000454534 490 ntBASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.28□□□□□ -1.88
PDLIM3Q53GG5 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms