Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 CU459211.1-201ENST00000635667 749 ntBASIC1.95□□□□□ -2.1
CHD3Q12873 Y_RNA.466-201ENST00000384294 113 ntBASIC1.95□□□□□ -2.1
CHD3Q12873 SNORA17.3-201ENST00000391159 129 ntBASIC1.95□□□□□ -2.1
CHD3Q12873 AL591416.1-201ENST00000404015 867 ntBASIC1.95□□□□□ -2.1
CHD3Q12873 AC013404.1-201ENST00000413068 249 ntBASIC1.95□□□□□ -2.1
CHD3Q12873 TRAPPC13P1-201ENST00000435991 1062 ntBASIC1.95□□□□□ -2.1
CHD3Q12873 ELOCP11-201ENST00000436690 332 ntBASIC1.95□□□□□ -2.1
CHD3Q12873 ELOCP16-201ENST00000444494 332 ntBASIC1.95□□□□□ -2.1
CHD3Q12873 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC1.95□□□□□ -2.1
CHD3Q12873 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC1.95□□□□□ -2.1
CHD3Q12873 AC104629.2-201ENST00000468627 598 ntBASIC1.95□□□□□ -2.1
CHD3Q12873 AC079804.2-201ENST00000490376 200 ntBASIC1.95□□□□□ -2.1
CHD3Q12873 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC1.95□□□□□ -2.1
CHD3Q12873 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.95□□□□□ -2.1
CHD3Q12873 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC1.95□□□□□ -2.1
CHD3Q12873 AC055764.2-201ENST00000610089 670 ntBASIC1.95□□□□□ -2.1
CHD3Q12873 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC1.95□□□□□ -2.1
CHD3Q12873 AC026241.1-201ENST00000517873 2142 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 SNORA51.11-201ENST00000384442 131 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 SNORA80E-201ENST00000384744 137 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CHD3Q12873 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC1.94□□□□□ -2.1
CHD3Q12873 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC1.94□□□□□ -2.1
CHD3Q12873 AC009414.1-201ENST00000427200 443 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 SNRPEP4-201ENST00000435815 279 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.94□□□□□ -2.1
CHD3Q12873 AC111193.1-201ENST00000504097 155 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 MTND4P2-201ENST00000507767 1203 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 CCNHP1-201ENST00000513311 678 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 AP003467.2-201ENST00000520175 319 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC1.94□□□□□ -2.1
CHD3Q12873 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.94□□□□□ -2.1
CHD3Q12873 GNAI2P1-201ENST00000541815 315 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC1.94□□□□□ -2.1
CHD3Q12873 AC135628.1-201ENST00000568867 534 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 AP001029.3-201ENST00000588063 596 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 AP000553.5-201ENST00000641933 54 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC1.94□□□□□ -2.1
CHD3Q12873 AC099654.7-201ENST00000635788 2127 ntBASIC1.94□□□□□ -2.1
CHD3Q12873 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
CHD3Q12873 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
CHD3Q12873 AL024474.1-201ENST00000404655 591 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.93□□□□□ -2.1
CHD3Q12873 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.93□□□□□ -2.1
CHD3Q12873 AC091917.2-201ENST00000505002 744 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.93□□□□□ -2.1
CHD3Q12873 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CHD3Q12873 AC245128.3-201ENST00000594721 748 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 AL356266.1-201ENST00000623311 483 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CHD3Q12873 RNU6-1293P-201ENST00000384077 107 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 U8.13-201ENST00000390842 128 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 RNA5SP213-201ENST00000391031 106 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 YWHAZP8-201ENST00000436935 731 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 RPL23AP58-201ENST00000440453 469 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC1.93□□□□□ -2.1
CHD3Q12873 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.93□□□□□ -2.1
CHD3Q12873 AC005539.1-201ENST00000443768 1479 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 ZNF519P1-201ENST00000449011 1626 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 AL513343.1-201ENST00000451818 792 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 RPL23AP49-201ENST00000492925 468 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 AC133963.2-201ENST00000513686 578 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 RPPH1-2P-201ENST00000516688 293 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 AC109635.4-202ENST00000531666 412 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.93□□□□□ -2.1
CHD3Q12873 AC009831.4-201ENST00000620744 325 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 RNU6-156P-201ENST00000621869 107 ntBASIC1.93□□□□□ -2.1
CHD3Q12873 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CHD3Q12873 MTND5P6-201ENST00000422338 1798 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.92□□□□□ -2.1
CHD3Q12873 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
CHD3Q12873 Y_RNA.40-201ENST00000362645 93 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 OR5H15-201ENST00000383696 930 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 RNU6-98P-201ENST00000384173 107 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC1.92□□□□□ -2.1
CHD3Q12873 FNDC3CP-201ENST00000420795 1155 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.92□□□□□ -2.1
CHD3Q12873 TRIM60P3Y-201ENST00000432201 673 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC1.92□□□□□ -2.1
CHD3Q12873 AL121871.1-201ENST00000443413 436 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC1.92□□□□□ -2.1
CHD3Q12873 snoU13.7-201ENST00000459220 104 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 AC072039.1-201ENST00000477611 581 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 RPL30P11-201ENST00000495304 339 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 PCNAP1-201ENST00000505363 709 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 RNA5SP281-201ENST00000516504 135 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 RN7SKP40-201ENST00000517211 242 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC1.92□□□□□ -2.1
CHD3Q12873 OR5BN1P-201ENST00000532955 829 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 AC012182.1-201ENST00000570133 895 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC1.92□□□□□ -2.1
CHD3Q12873 AC008962.1-201ENST00000605729 304 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 AC067747.1-201ENST00000608026 250 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 AL138880.2-201ENST00000616214 239 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC1.92□□□□□ -2.1
CHD3Q12873 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CHD3Q12873 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.92□□□□□ -2.1
CHD3Q12873 AC012321.1-201ENST00000561622 1588 ntBASIC1.92□□□□□ -2.1
CHD3Q12873 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms