Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MIR518C-201ENST00000384822 101 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 RNU6-1320P-201ENST00000390838 107 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 RNU6-1269P-201ENST00000391139 107 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A4P53420 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A4P53420 MTCO3P31-201ENST00000405526 789 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 SNORA79B-201ENST00000410557 148 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.81□□□□□ -1.96
COL4A4P53420 AL445213.1-201ENST00000412589 747 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.81□□□□□ -1.96
COL4A4P53420 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.81□□□□□ -1.96
COL4A4P53420 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC2.81□□□□□ -1.96
COL4A4P53420 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.81□□□□□ -1.96
COL4A4P53420 RNU6-599P-201ENST00000459383 107 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 RNU6-1193P-201ENST00000459461 107 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AC108734.3-201ENST00000481241 1165 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.81□□□□□ -1.96
COL4A4P53420 AC034244.1-201ENST00000507687 207 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AC112518.2-201ENST00000508565 425 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 MTCYBP16-201ENST00000509187 1129 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.81□□□□□ -1.96
COL4A4P53420 RNU6-1334P-201ENST00000516032 105 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC2.81□□□□□ -1.96
COL4A4P53420 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.81□□□□□ -1.96
COL4A4P53420 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A4P53420 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
COL4A4P53420 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.81□□□□□ -1.96
COL4A4P53420 AC023050.2-201ENST00000544968 387 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A4P53420 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC2.81□□□□□ -1.96
COL4A4P53420 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.81□□□□□ -1.96
COL4A4P53420 MIR4635-201ENST00000583759 79 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 MIR4719-201ENST00000585233 84 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.81□□□□□ -1.96
COL4A4P53420 AC103710.3-201ENST00000608157 948 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AL138478.1-201ENST00000612252 832 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AL356274.1-201ENST00000617064 410 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AC121761.2-201ENST00000617300 689 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 U6.42-201ENST00000618440 107 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.81□□□□□ -1.96
COL4A4P53420 AL603755.1-201ENST00000619504 163 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A4P53420 RNU6-368P-201ENST00000620928 107 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 RNU6-538P-201ENST00000622329 107 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 Z69908.1-201ENST00000622603 247 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 AC091931.1-201ENST00000623488 728 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.81□□□□□ -1.96
COL4A4P53420 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A4P53420 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
COL4A4P53420 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A4P53420 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
COL4A4P53420 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
COL4A4P53420 Y_RNA.796-201ENST00000364268 102 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 Y_RNA.799-201ENST00000364992 102 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL4A4P53420 RNU4-22P-201ENST00000411058 166 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 AC012498.1-201ENST00000424037 437 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 IPMKP1-201ENST00000425988 855 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.8□□□□□ -1.96
COL4A4P53420 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
COL4A4P53420 MTCO1P43-201ENST00000431831 488 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.8□□□□□ -1.96
COL4A4P53420 AC084290.1-201ENST00000434995 374 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 RPS7P2-201ENST00000435134 607 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 ARF4P4-201ENST00000439608 520 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 MRPL50P4-201ENST00000446432 475 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 RPL23AP15-201ENST00000450202 459 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 AC008280.2-201ENST00000455473 307 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 RNU7-125P-201ENST00000458760 62 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 AC135999.1-201ENST00000478962 479 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.8□□□□□ -1.96
COL4A4P53420 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.8□□□□□ -1.96
COL4A4P53420 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC2.8□□□□□ -1.96
COL4A4P53420 RNU6-1129P-201ENST00000515964 104 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 RNU6-964P-201ENST00000516524 69 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.8□□□□□ -1.96
COL4A4P53420 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC2.8□□□□□ -1.96
COL4A4P53420 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
COL4A4P53420 AC022880.1-201ENST00000534017 973 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC2.8□□□□□ -1.96
COL4A4P53420 AC008015.1-201ENST00000555505 465 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.8□□□□□ -1.96
COL4A4P53420 AC107871.2-201ENST00000612894 502 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 AC090897.3-201ENST00000636973 1157 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 AC099654.13-201ENST00000639774 207 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
COL4A4P53420 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC2.8□□□□□ -1.96
COL4A4P53420 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.8□□□□□ -1.96
COL4A4P53420 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL4A4P53420 AC016717.2-201ENST00000609089 5141 ntBASIC2.8□□□□□ -1.96
COL4A4P53420 Y_RNA.269-201ENST00000364685 89 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 MIR421-201ENST00000365696 85 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 SNORA36C-201ENST00000384289 132 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 RNU4-26P-201ENST00000410270 107 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 ELOCP17-201ENST00000414751 326 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC2.79□□□□□ -1.96
COL4A4P53420 ARL2BPP3-201ENST00000421226 480 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A4P53420 AC093422.3-201ENST00000428506 305 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 FO393414.1-201ENST00000428697 1184 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms