Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIR3682-201ENST00000581338 84 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AC090616.5-202ENST00000582111 297 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC4.54□□□□□ -1.68
SMARCA1P28370 AC004853.1-201ENST00000604902 698 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AC128687.2-201ENST00000609657 566 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AC012150.2-201ENST00000621300 544 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 MIR4727-201ENST00000622232 55 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 CR381572.1-201ENST00000625098 102 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AC016588.2-201ENST00000632484 3021 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SMARCA1P28370 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.54□□□□□ -1.68
SMARCA1P28370 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SMARCA1P28370 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
SMARCA1P28370 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
SMARCA1P28370 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.53□□□□□ -1.68
SMARCA1P28370 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SMARCA1P28370 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SMARCA1P28370 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SMARCA1P28370 RNU6-989P-201ENST00000362756 107 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 Y_RNA.126-201ENST00000363382 111 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.53□□□□□ -1.68
SMARCA1P28370 RNU6-837P-201ENST00000391056 108 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SMARCA1P28370 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.53□□□□□ -1.68
SMARCA1P28370 SNORA3.3-201ENST00000408712 125 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.53□□□□□ -1.68
SMARCA1P28370 RPL17P36-201ENST00000420302 549 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC4.53□□□□□ -1.68
SMARCA1P28370 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.53□□□□□ -1.68
SMARCA1P28370 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.53□□□□□ -1.68
SMARCA1P28370 USP9YP7-201ENST00000436723 430 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.53□□□□□ -1.68
SMARCA1P28370 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.53□□□□□ -1.68
SMARCA1P28370 USP9YP32-201ENST00000452432 430 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 snoU13.8-201ENST00000458890 104 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 RPL7P15-201ENST00000461190 712 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.53□□□□□ -1.68
SMARCA1P28370 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.53□□□□□ -1.68
SMARCA1P28370 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.53□□□□□ -1.68
SMARCA1P28370 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.53□□□□□ -1.68
SMARCA1P28370 COX7A2P2-201ENST00000505291 250 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 AC108078.1-201ENST00000508073 725 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC4.53□□□□□ -1.68
SMARCA1P28370 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.53□□□□□ -1.68
SMARCA1P28370 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.53□□□□□ -1.68
SMARCA1P28370 Vault.1-201ENST00000516474 102 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.53□□□□□ -1.68
SMARCA1P28370 AP003497.1-201ENST00000528472 562 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.53□□□□□ -1.68
SMARCA1P28370 CYCSP30-201ENST00000546447 172 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 CBX3P5-201ENST00000552017 521 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.53□□□□□ -1.68
SMARCA1P28370 AL355472.4-201ENST00000610233 626 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 AC040168.1-201ENST00000623594 991 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 AC079597.1-201ENST00000624306 508 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 AC124864.2-201ENST00000624736 186 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.53□□□□□ -1.68
SMARCA1P28370 AC010149.2-201ENST00000637608 315 ntBASIC4.53□□□□□ -1.68
SMARCA1P28370 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
SMARCA1P28370 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.53□□□□□ -1.68
SMARCA1P28370 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.53□□□□□ -1.68
SMARCA1P28370 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SMARCA1P28370 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SMARCA1P28370 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SMARCA1P28370 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SMARCA1P28370 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SMARCA1P28370 IPO8P1-201ENST00000455509 3109 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.52□□□□□ -1.69
SMARCA1P28370 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SMARCA1P28370 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SMARCA1P28370 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SMARCA1P28370 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.52□□□□□ -1.69
SMARCA1P28370 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.52□□□□□ -1.69
SMARCA1P28370 RNU6-97P-201ENST00000363387 104 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 RNA5SP97-201ENST00000365006 84 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 RPL17P50-201ENST00000396131 546 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 AC092832.1-201ENST00000422934 400 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 NANOGP6-201ENST00000429190 847 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 MTND3P21-201ENST00000433774 331 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC4.52□□□□□ -1.69
SMARCA1P28370 UBE2V1P8-201ENST00000437166 265 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.52□□□□□ -1.69
SMARCA1P28370 AC079448.1-201ENST00000449377 373 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 AP1S2P1-201ENST00000457344 379 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC4.52□□□□□ -1.69
SMARCA1P28370 HMGB3P30-201ENST00000457863 606 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 RNU6-314P-201ENST00000516574 104 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.52□□□□□ -1.69
SMARCA1P28370 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC4.52□□□□□ -1.69
SMARCA1P28370 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC4.52□□□□□ -1.69
SMARCA1P28370 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.52□□□□□ -1.69
SMARCA1P28370 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.52□□□□□ -1.69
SMARCA1P28370 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.52□□□□□ -1.69
SMARCA1P28370 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.52□□□□□ -1.69
SMARCA1P28370 MIR3118-1-201ENST00000581787 76 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 DUXAP4-201ENST00000603046 613 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 AC090517.2-201ENST00000614966 680 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 U4.5-201ENST00000617137 123 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms