Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC1.76□□□□□ -2.13
VCANP13611 AC015720.1-201ENST00000565251 277 ntBASIC1.76□□□□□ -2.13
VCANP13611 AL353770.2-201ENST00000620024 78 ntBASIC1.76□□□□□ -2.13
VCANP13611 RBM12B-AS1-201ENST00000623283 653 ntBASIC1.76□□□□□ -2.13
VCANP13611 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC1.76□□□□□ -2.13
VCANP13611 RNU6-60P-201ENST00000364792 103 ntBASIC1.76□□□□□ -2.13
VCANP13611 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
VCANP13611 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC1.76□□□□□ -2.13
VCANP13611 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC1.76□□□□□ -2.13
VCANP13611 AC103810.1-201ENST00000579873 453 ntBASIC1.76□□□□□ -2.13
VCANP13611 AC068944.2-201ENST00000610373 403 ntBASIC1.76□□□□□ -2.13
VCANP13611 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC1.76□□□□□ -2.13
VCANP13611 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.75□□□□□ -2.13
VCANP13611 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
VCANP13611 NDUFB4P5-201ENST00000415445 361 ntBASIC1.75□□□□□ -2.13
VCANP13611 RFC5P1-201ENST00000454419 874 ntBASIC1.75□□□□□ -2.13
VCANP13611 AC022790.1-201ENST00000522872 204 ntBASIC1.75□□□□□ -2.13
VCANP13611 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC1.75□□□□□ -2.13
VCANP13611 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.75□□□□□ -2.13
VCANP13611 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC1.75□□□□□ -2.13
VCANP13611 AL133412.1-201ENST00000380194 2992 ntBASIC1.75□□□□□ -2.13
VCANP13611 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
VCANP13611 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
VCANP13611 TEX21P-201ENST00000447107 1476 ntBASIC1.75□□□□□ -2.13
VCANP13611 Y_RNA.294-201ENST00000364916 102 ntBASIC1.75□□□□□ -2.13
VCANP13611 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.75□□□□□ -2.13
VCANP13611 VN1R108P-201ENST00000431580 830 ntBASIC1.75□□□□□ -2.13
VCANP13611 HMGB1P26-201ENST00000452520 628 ntBASIC1.75□□□□□ -2.13
VCANP13611 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.75□□□□□ -2.13
VCANP13611 HMGB1P47-201ENST00000511281 589 ntBASIC1.75□□□□□ -2.13
VCANP13611 RNA5SP121-201ENST00000516537 101 ntBASIC1.75□□□□□ -2.13
VCANP13611 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC1.75□□□□□ -2.13
VCANP13611 RNA5SP502-201ENST00000362694 119 ntBASIC1.75□□□□□ -2.13
VCANP13611 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
VCANP13611 AC009474.2-201ENST00000451383 136 ntBASIC1.75□□□□□ -2.13
VCANP13611 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC1.75□□□□□ -2.13
VCANP13611 AC083806.3-201ENST00000614016 455 ntBASIC1.75□□□□□ -2.13
VCANP13611 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
VCANP13611 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
VCANP13611 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
VCANP13611 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
VCANP13611 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
VCANP13611 AL513331.1-201ENST00000411908 397 ntBASIC1.74□□□□□ -2.13
VCANP13611 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.74□□□□□ -2.13
VCANP13611 AC129850.1-201ENST00000436203 508 ntBASIC1.74□□□□□ -2.13
VCANP13611 GSTA11P-201ENST00000452866 669 ntBASIC1.74□□□□□ -2.13
VCANP13611 RNU6-717P-201ENST00000459076 104 ntBASIC1.74□□□□□ -2.13
VCANP13611 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.74□□□□□ -2.13
VCANP13611 COX6CP5-201ENST00000527162 228 ntBASIC1.74□□□□□ -2.13
VCANP13611 AC103810.8-201ENST00000607347 118 ntBASIC1.74□□□□□ -2.13
VCANP13611 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC1.74□□□□□ -2.13
VCANP13611 AC007560.1-201ENST00000426912 237 ntBASIC1.74□□□□□ -2.13
VCANP13611 HMGB1P45-201ENST00000435986 653 ntBASIC1.74□□□□□ -2.13
VCANP13611 CALM1P1-201ENST00000442082 433 ntBASIC1.74□□□□□ -2.13
VCANP13611 AC021087.2-201ENST00000504656 1203 ntBASIC1.74□□□□□ -2.13
VCANP13611 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.74□□□□□ -2.13
VCANP13611 AC060766.3-201ENST00000591442 263 ntBASIC1.74□□□□□ -2.13
VCANP13611 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC1.74□□□□□ -2.13
VCANP13611 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
VCANP13611 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.73□□□□□ -2.13
VCANP13611 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
VCANP13611 AMD1P1-201ENST00000457220 922 ntBASIC1.73□□□□□ -2.13
VCANP13611 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC1.73□□□□□ -2.13
VCANP13611 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC1.73□□□□□ -2.13
VCANP13611 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
VCANP13611 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.73□□□□□ -2.13
VCANP13611 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC1.73□□□□□ -2.13
VCANP13611 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.73□□□□□ -2.13
VCANP13611 DUXAP8-207ENST00000456786 622 ntBASIC1.73□□□□□ -2.13
VCANP13611 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
VCANP13611 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
VCANP13611 THAP5P1-201ENST00000439089 262 ntBASIC1.73□□□□□ -2.13
VCANP13611 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.73□□□□□ -2.13
VCANP13611 FABP5P5-201ENST00000515537 406 ntBASIC1.73□□□□□ -2.13
VCANP13611 AC019176.1-201ENST00000518519 225 ntBASIC1.73□□□□□ -2.13
VCANP13611 SETP7-201ENST00000552169 453 ntBASIC1.73□□□□□ -2.13
VCANP13611 MIR5000-201ENST00000577717 103 ntBASIC1.73□□□□□ -2.13
VCANP13611 AL627309.6-201ENST00000606857 840 ntBASIC1.73□□□□□ -2.13
VCANP13611 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC1.73□□□□□ -2.13
VCANP13611 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC1.72□□□□□ -2.13
VCANP13611 RNU6-115P-201ENST00000364310 107 ntBASIC1.72□□□□□ -2.13
VCANP13611 SAR1AP4-201ENST00000429225 591 ntBASIC1.72□□□□□ -2.13
VCANP13611 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.72□□□□□ -2.13
VCANP13611 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC1.72□□□□□ -2.13
VCANP13611 MTCO3P13-201ENST00000577757 781 ntBASIC1.72□□□□□ -2.13
VCANP13611 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.72□□□□□ -2.13
VCANP13611 MIR6086-201ENST00000638065 55 ntBASIC1.72□□□□□ -2.13
VCANP13611 MIR1183-201ENST00000408856 89 ntBASIC1.72□□□□□ -2.13
VCANP13611 RPS3AP44-201ENST00000425466 790 ntBASIC1.72□□□□□ -2.13
VCANP13611 SETP8-201ENST00000435341 628 ntBASIC1.72□□□□□ -2.13
VCANP13611 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.72□□□□□ -2.13
VCANP13611 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.72□□□□□ -2.13
VCANP13611 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC1.72□□□□□ -2.13
VCANP13611 CR383656.8-201ENST00000549046 145 ntBASIC1.72□□□□□ -2.13
VCANP13611 AL845331.3-202ENST00000562856 261 ntBASIC1.72□□□□□ -2.13
VCANP13611 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC1.72□□□□□ -2.13
VCANP13611 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.72□□□□□ -2.13
VCANP13611 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
VCANP13611 MIR6073-201ENST00000352083 89 ntBASIC1.72□□□□□ -2.13
VCANP13611 RPL23AP29-201ENST00000397284 453 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms