Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RPL23AP74-201ENST00000437246 471 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.9□□□□□ -1.63
COL6A1P12109 AL133547.1-201ENST00000448546 220 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.9□□□□□ -1.63
COL6A1P12109 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.9□□□□□ -1.63
COL6A1P12109 AC090453.1-201ENST00000495560 436 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL6A1P12109 AC006499.6-201ENST00000511169 607 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC4.9□□□□□ -1.63
COL6A1P12109 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.9□□□□□ -1.63
COL6A1P12109 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.9□□□□□ -1.63
COL6A1P12109 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.9□□□□□ -1.63
COL6A1P12109 AC092470.1-201ENST00000546187 132 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 AC078814.3-201ENST00000553036 491 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.9□□□□□ -1.63
COL6A1P12109 IGHV3-29-201ENST00000604817 344 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 AL132765.2-201ENST00000610812 351 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 AC024940.5-201ENST00000622889 474 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 AC009161.2-201ENST00000624626 138 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.9□□□□□ -1.63
COL6A1P12109 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
COL6A1P12109 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 RLIMP1-201ENST00000339626 1680 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A1P12109 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
COL6A1P12109 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A1P12109 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
COL6A1P12109 RNU6-1120P-201ENST00000362988 108 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 SNORA51.2-201ENST00000364595 132 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 Y_RNA.431-201ENST00000384086 102 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 RNU6-921P-201ENST00000384361 107 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 AL356432.1-201ENST00000405809 419 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 RPL21P65-201ENST00000406094 466 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 AL354751.2-201ENST00000415471 210 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 AC005517.2-201ENST00000424673 553 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 AL445584.1-201ENST00000431451 330 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 ATP5HP2-201ENST00000433885 485 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.89□□□□□ -1.63
COL6A1P12109 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC4.89□□□□□ -1.63
COL6A1P12109 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.89□□□□□ -1.63
COL6A1P12109 CBWD4P-201ENST00000445695 655 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.89□□□□□ -1.63
COL6A1P12109 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.89□□□□□ -1.63
COL6A1P12109 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 AC093278.1-201ENST00000494700 600 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 FTH1P21-201ENST00000512179 511 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.89□□□□□ -1.63
COL6A1P12109 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.89□□□□□ -1.63
COL6A1P12109 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.89□□□□□ -1.63
COL6A1P12109 AC022861.1-201ENST00000522981 663 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.89□□□□□ -1.63
COL6A1P12109 ZNF705CP-201ENST00000530515 889 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A1P12109 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.89□□□□□ -1.63
COL6A1P12109 TVP23BP1-201ENST00000557500 617 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 CR392039.5-201ENST00000623201 510 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.89□□□□□ -1.63
COL6A1P12109 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 AL049780.3-201ENST00000624612 1583 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.89□□□□□ -1.63
COL6A1P12109 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A1P12109 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
COL6A1P12109 AC107068.1-201ENST00000563286 4218 ntBASIC4.89□□□□□ -1.63
COL6A1P12109 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A1P12109 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
COL6A1P12109 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
COL6A1P12109 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
COL6A1P12109 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A1P12109 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A1P12109 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A1P12109 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A1P12109 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A1P12109 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL6A1P12109 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A1P12109 FRG1BP-201ENST00000278882 761 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 RNU6-744P-201ENST00000365557 107 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A1P12109 RNU6-1316P-201ENST00000384242 108 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 MIR649-201ENST00000384843 97 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 SNORA11.2-201ENST00000408318 127 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A1P12109 AC091390.3-201ENST00000426478 338 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 GOT2P5-201ENST00000433995 546 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 AL356276.2-201ENST00000435919 558 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A1P12109 AC012671.1-201ENST00000451912 203 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A1P12109 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC4.88□□□□□ -1.63
COL6A1P12109 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms