Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC084782.3-201ENST00000612282 578 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
HOXD4P09016 PCMTD1P7-201ENST00000634506 357 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
HOXD4P09016 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
HOXD4P09016 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD4P09016 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD4P09016 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD4P09016 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXD4P09016 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
HOXD4P09016 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
HOXD4P09016 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD4P09016 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD4P09016 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD4P09016 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD4P09016 SNORA38.1-201ENST00000364172 131 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 RNU6-335P-201ENST00000364563 113 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 Y_RNA.318-201ENST00000365131 97 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXD4P09016 MIR607-201ENST00000385241 96 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 SNORA48.8-201ENST00000391324 134 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AL121972.1-201ENST00000402023 252 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AL136116.1-201ENST00000403591 381 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD4P09016 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD4P09016 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC005326.1-201ENST00000429197 123 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AL035407.1-201ENST00000429211 571 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 MTND1P20-201ENST00000430341 950 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC092427.1-201ENST00000439177 601 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.17□□□□□ -1.9
HOXD4P09016 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD4P09016 VN1R10P-201ENST00000447106 875 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD4P09016 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD4P09016 ARPC3P2-201ENST00000457786 533 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 RPL31P3-201ENST00000458430 332 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC008155.2-201ENST00000464337 397 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC092757.1-201ENST00000467293 467 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 SETP11-201ENST00000473027 690 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC010301.1-201ENST00000473936 355 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC072039.1-201ENST00000477611 581 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 RPS3AP50-201ENST00000487064 803 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD4P09016 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD4P09016 AC114967.1-201ENST00000504890 259 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.17□□□□□ -1.9
HOXD4P09016 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD4P09016 RNU2-27P-201ENST00000516185 142 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 RNU2-58P-201ENST00000516403 183 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD4P09016 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD4P09016 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD4P09016 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD4P09016 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.17□□□□□ -1.9
HOXD4P09016 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD4P09016 OR4T1P-201ENST00000554933 911 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD4P09016 CYCSP2-201ENST00000558168 301 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 NBR2-204ENST00000587322 63 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 SNRPGP15-201ENST00000600149 222 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC135507.1-201ENST00000607214 561 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC139792.2-201ENST00000624218 587 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC116096.1-201ENST00000566804 2314 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 AC004972.1-201ENST00000623934 2209 ntBASIC3.17□□□□□ -1.9
HOXD4P09016 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD4P09016 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXD4P09016 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
HOXD4P09016 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXD4P09016 AL356274.2-201ENST00000624379 3752 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AC073073.2-201ENST00000609827 2578 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXD4P09016 RNU6-374P-201ENST00000364146 108 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 Y_RNA.302-201ENST00000364997 102 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
HOXD4P09016 SNORA48.2-201ENST00000390926 124 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 U3.39-201ENST00000408569 239 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 RNU2-37P-201ENST00000410695 177 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AC126124.2-201ENST00000413542 321 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 OR1AA1P-201ENST00000419597 916 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXD4P09016 AL953862.1-201ENST00000423016 168 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AC006989.1-201ENST00000427212 131 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 OR2B8P-201ENST00000432841 938 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD4P09016 NEK4P1-201ENST00000433383 879 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 RPL21P112-201ENST00000434403 463 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 THAP5P1-201ENST00000439089 262 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD4P09016 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD4P09016 RPL39P6-201ENST00000448289 150 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 snoU13.3-201ENST00000459441 104 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 RPL7P5-201ENST00000471472 736 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AL136126.1-201ENST00000473603 402 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AC080014.1-201ENST00000496877 1201 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXD4P09016 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD4P09016 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms