Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.99□□□□□ -2.09
TNFP01375 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC1.99□□□□□ -2.09
TNFP01375 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
TNFP01375 AL139276.1-201ENST00000311910 1001 ntBASIC1.99□□□□□ -2.09
TNFP01375 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC1.99□□□□□ -2.09
TNFP01375 U3.37-201ENST00000408528 213 ntBASIC1.99□□□□□ -2.09
TNFP01375 RNU6-1140P-201ENST00000410517 106 ntBASIC1.99□□□□□ -2.09
TNFP01375 RNA5SP498-201ENST00000411342 120 ntBASIC1.99□□□□□ -2.09
TNFP01375 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC1.99□□□□□ -2.09
TNFP01375 MTCO3P30-201ENST00000426425 670 ntBASIC1.99□□□□□ -2.09
TNFP01375 AC027124.2-201ENST00000428249 105 ntBASIC1.99□□□□□ -2.09
TNFP01375 UBE2V1P6-201ENST00000430840 422 ntBASIC1.99□□□□□ -2.09
TNFP01375 AL591806.2-201ENST00000433122 173 ntBASIC1.99□□□□□ -2.09
TNFP01375 RPL34P26-201ENST00000445636 354 ntBASIC1.99□□□□□ -2.09
TNFP01375 RPL31P20-201ENST00000449593 360 ntBASIC1.99□□□□□ -2.09
TNFP01375 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.99□□□□□ -2.09
TNFP01375 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC1.99□□□□□ -2.09
TNFP01375 AC017007.3-201ENST00000479865 435 ntBASIC1.99□□□□□ -2.09
TNFP01375 AC135721.1-201ENST00000497954 479 ntBASIC1.99□□□□□ -2.09
TNFP01375 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.99□□□□□ -2.09
TNFP01375 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC1.99□□□□□ -2.09
TNFP01375 HMGB3P3-201ENST00000510526 400 ntBASIC1.99□□□□□ -2.09
TNFP01375 RNA5SP82-201ENST00000516707 92 ntBASIC1.99□□□□□ -2.09
TNFP01375 RNA5SP471-201ENST00000516971 106 ntBASIC1.99□□□□□ -2.09
TNFP01375 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC1.99□□□□□ -2.09
TNFP01375 MTND2P26-201ENST00000528255 1029 ntBASIC1.99□□□□□ -2.09
TNFP01375 AC007115.1-201ENST00000546853 234 ntBASIC1.99□□□□□ -2.09
TNFP01375 NOP56P3-201ENST00000549457 385 ntBASIC1.99□□□□□ -2.09
TNFP01375 PRELID2P1-201ENST00000552837 301 ntBASIC1.99□□□□□ -2.09
TNFP01375 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.99□□□□□ -2.09
TNFP01375 AC103710.2-201ENST00000609912 942 ntBASIC1.99□□□□□ -2.09
TNFP01375 AC009318.2-201ENST00000610917 651 ntBASIC1.99□□□□□ -2.09
TNFP01375 MIR6895-201ENST00000613497 78 ntBASIC1.99□□□□□ -2.09
TNFP01375 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC1.99□□□□□ -2.09
TNFP01375 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
TNFP01375 MTND4P35-201ENST00000604257 1375 ntBASIC1.98□□□□□ -2.09
TNFP01375 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
TNFP01375 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.98□□□□□ -2.09
TNFP01375 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
TNFP01375 AL356292.1-201ENST00000283110 373 ntBASIC1.98□□□□□ -2.09
TNFP01375 FAM133CP-201ENST00000332869 704 ntBASIC1.98□□□□□ -2.09
TNFP01375 RNU2-2P-201ENST00000410396 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.98□□□□□ -2.09
TNFP01375 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC1.98□□□□□ -2.09
TNFP01375 AL591719.1-201ENST00000444669 744 ntBASIC1.98□□□□□ -2.09
TNFP01375 snoU13.23-201ENST00000458863 104 ntBASIC1.98□□□□□ -2.09
TNFP01375 AC096992.1-201ENST00000459808 709 ntBASIC1.98□□□□□ -2.09
TNFP01375 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.98□□□□□ -2.09
TNFP01375 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.98□□□□□ -2.09
TNFP01375 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC1.98□□□□□ -2.09
TNFP01375 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
TNFP01375 AP000790.1-201ENST00000528891 737 ntBASIC1.98□□□□□ -2.09
TNFP01375 AC015712.3-201ENST00000559380 164 ntBASIC1.98□□□□□ -2.09
TNFP01375 MIR5694-201ENST00000581190 76 ntBASIC1.98□□□□□ -2.09
TNFP01375 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC1.98□□□□□ -2.09
TNFP01375 AL121917.1-203ENST00000605534 577 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.15-201ENST00000611544 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.16-201ENST00000613119 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.12-201ENST00000613778 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.20-201ENST00000613956 192 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.9-201ENST00000615427 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.11-201ENST00000616345 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.2-201ENST00000616535 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.3-201ENST00000617785 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.19-201ENST00000618602 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 RNU2-1-201ENST00000618664 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.6-201ENST00000619225 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.5-201ENST00000619465 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 U2.10-201ENST00000620268 191 ntBASIC1.98□□□□□ -2.09
TNFP01375 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.98□□□□□ -2.09
TNFP01375 AC012321.1-201ENST00000561622 1588 ntBASIC1.98□□□□□ -2.09
TNFP01375 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
TNFP01375 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC1.97□□□□□ -2.09
TNFP01375 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
TNFP01375 OR56A5-201ENST00000340110 738 ntBASIC1.97□□□□□ -2.09
TNFP01375 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
TNFP01375 RNU2-21P-201ENST00000410368 188 ntBASIC1.97□□□□□ -2.09
TNFP01375 AL139156.1-201ENST00000412785 841 ntBASIC1.97□□□□□ -2.09
TNFP01375 AF274854.1-201ENST00000413236 615 ntBASIC1.97□□□□□ -2.09
TNFP01375 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC1.97□□□□□ -2.09
TNFP01375 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.97□□□□□ -2.09
TNFP01375 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC1.97□□□□□ -2.09
TNFP01375 SDR42E1P3-201ENST00000438345 502 ntBASIC1.97□□□□□ -2.09
TNFP01375 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.97□□□□□ -2.09
TNFP01375 SYPL1P1-201ENST00000473622 768 ntBASIC1.97□□□□□ -2.09
TNFP01375 AC105914.1-201ENST00000511798 226 ntBASIC1.97□□□□□ -2.09
TNFP01375 AC104115.2-201ENST00000523026 687 ntBASIC1.97□□□□□ -2.09
TNFP01375 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC1.97□□□□□ -2.09
TNFP01375 MIR5002-201ENST00000584713 97 ntBASIC1.97□□□□□ -2.09
TNFP01375 AC090525.3-201ENST00000605601 189 ntBASIC1.97□□□□□ -2.09
TNFP01375 AC006329.2-201ENST00000611491 394 ntBASIC1.97□□□□□ -2.09
TNFP01375 MIR7973-1-201ENST00000614683 76 ntBASIC1.97□□□□□ -2.09
TNFP01375 AC241585.2-209ENST00000638217 143 ntBASIC1.97□□□□□ -2.09
TNFP01375 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
TNFP01375 AC244517.1-201ENST00000606030 2086 ntBASIC1.97□□□□□ -2.09
TNFP01375 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.96□□□□□ -2.1
TNFP01375 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.96□□□□□ -2.1
TNFP01375 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
TNFP01375 RNA5SP432-201ENST00000362480 116 ntBASIC1.96□□□□□ -2.1
TNFP01375 AL121972.1-201ENST00000402023 252 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms