Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AMD1P1-201ENST00000457220 922 ntBASIC2.87□□□□□ -1.95
CCDC88BA6NC98 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC88BA6NC98 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC88BA6NC98 AL049838.1-201ENST00000563647 981 ntBASIC2.87□□□□□ -1.95
CCDC88BA6NC98 AL049779.4-201ENST00000604500 156 ntBASIC2.87□□□□□ -1.95
CCDC88BA6NC98 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC88BA6NC98 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
CCDC88BA6NC98 MTND1P23-201ENST00000416931 372 ntBASIC2.86□□□□□ -1.95
CCDC88BA6NC98 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC88BA6NC98 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC88BA6NC98 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC88BA6NC98 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC88BA6NC98 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC88BA6NC98 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
CCDC88BA6NC98 AC013404.1-201ENST00000413068 249 ntBASIC2.85□□□□□ -1.95
CCDC88BA6NC98 AL009174.1-201ENST00000426577 416 ntBASIC2.85□□□□□ -1.95
CCDC88BA6NC98 RPS7P2-201ENST00000435134 607 ntBASIC2.85□□□□□ -1.95
CCDC88BA6NC98 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC88BA6NC98 AL031659.1-201ENST00000447075 539 ntBASIC2.85□□□□□ -1.95
CCDC88BA6NC98 snoU13.18-201ENST00000459483 104 ntBASIC2.85□□□□□ -1.95
CCDC88BA6NC98 RNU2-58P-201ENST00000516403 183 ntBASIC2.85□□□□□ -1.95
CCDC88BA6NC98 AC104115.2-201ENST00000523026 687 ntBASIC2.85□□□□□ -1.95
CCDC88BA6NC98 AC084757.1-201ENST00000559987 490 ntBASIC2.85□□□□□ -1.95
CCDC88BA6NC98 ZNF192P1-203ENST00000565888 810 ntBASIC2.85□□□□□ -1.95
CCDC88BA6NC98 AL512598.1-201ENST00000610158 273 ntBASIC2.85□□□□□ -1.95
CCDC88BA6NC98 ZNF876P-202ENST00000398732 1485 ntBASIC2.85□□□□□ -1.95
CCDC88BA6NC98 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
CCDC88BA6NC98 DCAF13P1-201ENST00000495256 1330 ntBASIC2.84□□□□□ -1.95
CCDC88BA6NC98 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CCDC88BA6NC98 OR7L1P-201ENST00000456181 380 ntBASIC2.84□□□□□ -1.95
CCDC88BA6NC98 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC88BA6NC98 AC109464.2-201ENST00000510242 943 ntBASIC2.84□□□□□ -1.95
CCDC88BA6NC98 HMGB1P47-201ENST00000511281 589 ntBASIC2.84□□□□□ -1.95
CCDC88BA6NC98 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.84□□□□□ -1.95
CCDC88BA6NC98 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC88BA6NC98 XKRY2-202ENST00000623874 1581 ntBASIC2.84□□□□□ -1.95
CCDC88BA6NC98 XKRY-202ENST00000624960 1581 ntBASIC2.84□□□□□ -1.95
CCDC88BA6NC98 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC88BA6NC98 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.84□□□□□ -1.96
CCDC88BA6NC98 AC240504.1-201ENST00000395709 845 ntBASIC2.84□□□□□ -1.96
CCDC88BA6NC98 AC023128.2-201ENST00000420880 1223 ntBASIC2.84□□□□□ -1.96
CCDC88BA6NC98 ARPC3P1-201ENST00000437218 533 ntBASIC2.84□□□□□ -1.96
CCDC88BA6NC98 CLIC4P1-201ENST00000453177 535 ntBASIC2.84□□□□□ -1.96
CCDC88BA6NC98 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC2.84□□□□□ -1.96
CCDC88BA6NC98 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.84□□□□□ -1.96
CCDC88BA6NC98 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC2.84□□□□□ -1.96
CCDC88BA6NC98 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.84□□□□□ -1.96
CCDC88BA6NC98 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.84□□□□□ -1.96
CCDC88BA6NC98 AC012360.2-201ENST00000609349 391 ntBASIC2.84□□□□□ -1.96
CCDC88BA6NC98 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.84□□□□□ -1.96
CCDC88BA6NC98 CFTRP2-201ENST00000634304 199 ntBASIC2.84□□□□□ -1.96
CCDC88BA6NC98 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CCDC88BA6NC98 RNU6-60P-201ENST00000364792 103 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 MIR124-3-201ENST00000384866 87 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 TAS2R15P-201ENST00000390674 928 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 MIR1276-201ENST00000408707 83 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 RNU2-68P-201ENST00000410878 191 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 RN7SKP101-201ENST00000411376 320 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 POLHP1-201ENST00000411806 470 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 BNIP3P2-201ENST00000441221 577 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.83□□□□□ -1.96
CCDC88BA6NC98 RN7SKP82-201ENST00000516786 223 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC88BA6NC98 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC2.83□□□□□ -1.96
CCDC88BA6NC98 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.83□□□□□ -1.96
CCDC88BA6NC98 AP001029.3-201ENST00000588063 596 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 AC008687.2-201ENST00000597865 520 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 BX248123.2-201ENST00000606318 124 ntBASIC2.83□□□□□ -1.96
CCDC88BA6NC98 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC88BA6NC98 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
CCDC88BA6NC98 MCTS2P-201ENST00000394552 546 ntBASIC2.82□□□□□ -1.96
CCDC88BA6NC98 RNU6-603P-201ENST00000411403 107 ntBASIC2.82□□□□□ -1.96
CCDC88BA6NC98 AC234782.4-201ENST00000417646 1048 ntBASIC2.82□□□□□ -1.96
CCDC88BA6NC98 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC88BA6NC98 AC109583.1-201ENST00000432156 268 ntBASIC2.82□□□□□ -1.96
CCDC88BA6NC98 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC88BA6NC98 HSPE1P28-201ENST00000443139 211 ntBASIC2.82□□□□□ -1.96
CCDC88BA6NC98 AP000873.1-201ENST00000463987 400 ntBASIC2.82□□□□□ -1.96
CCDC88BA6NC98 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC88BA6NC98 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC88BA6NC98 MTCO1P30-201ENST00000515244 580 ntBASIC2.82□□□□□ -1.96
CCDC88BA6NC98 IGLV3-17-201ENST00000519099 244 ntBASIC2.82□□□□□ -1.96
CCDC88BA6NC98 AP004242.1-201ENST00000533701 349 ntBASIC2.82□□□□□ -1.96
CCDC88BA6NC98 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC88BA6NC98 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC88BA6NC98 AC012150.2-201ENST00000621300 544 ntBASIC2.82□□□□□ -1.96
CCDC88BA6NC98 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC88BA6NC98 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC88BA6NC98 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC88BA6NC98 VN1R31P-201ENST00000417498 730 ntBASIC2.81□□□□□ -1.96
CCDC88BA6NC98 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC88BA6NC98 AC093392.2-201ENST00000450682 337 ntBASIC2.81□□□□□ -1.96
CCDC88BA6NC98 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC88BA6NC98 SNORD116-26-201ENST00000516006 96 ntBASIC2.81□□□□□ -1.96
CCDC88BA6NC98 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC88BA6NC98 RPL23AP88-201ENST00000605759 454 ntBASIC2.81□□□□□ -1.96
CCDC88BA6NC98 DUXAP9-208ENST00000622815 614 ntBASIC2.81□□□□□ -1.96
CCDC88BA6NC98 MIR4278-201ENST00000636094 69 ntBASIC2.81□□□□□ -1.96
CCDC88BA6NC98 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC88BA6NC98 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms