Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC025181.1-201ENST00000477507 416 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 RPS3AP14-201ENST00000483907 780 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC098799.1-201ENST00000504752 800 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC009901.1-201ENST00000506703 541 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 ZNF705CP-201ENST00000530515 889 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 PRELID2P1-201ENST00000552837 301 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 AP005205.1-201ENST00000563503 508 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 GLUD1P4-201ENST00000590914 418 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC040174.2-201ENST00000602701 465 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC055876.5-201ENST00000605667 259 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 AC106730.3-201ENST00000624568 641 ntBASIC2.55□□□□□ -2
USH1CQ9Y6N9 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC2.55□□□□□ -2
USH1CQ9Y6N9 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USH1CQ9Y6N9 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 RNU1-112P-201ENST00000364401 164 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 SNORA18.3-201ENST00000384122 132 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AL592148.1-201ENST00000413568 445 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 AL139132.1-201ENST00000431587 344 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 RSL24D1P3-201ENST00000449255 495 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 NAP1L1P3-201ENST00000462291 880 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AC023424.2-201ENST00000493479 777 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AC093767.1-201ENST00000504523 156 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 RNA5SP367-201ENST00000516557 118 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 CKS1BP7-201ENST00000522230 235 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 AP000790.1-201ENST00000528891 737 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 NBEAP1-201ENST00000554452 979 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 MED28P6-201ENST00000558776 231 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 NIFKP8-201ENST00000560500 874 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 MTATP6P25-201ENST00000574491 261 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 GAS5-AS1-201ENST00000602767 694 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AC245100.7-201ENST00000609678 442 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AL138880.2-201ENST00000616214 239 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 ATP5A1P2-202ENST00000616464 443 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AC002064.3-201ENST00000623448 346 ntBASIC2.54□□□□□ -2
USH1CQ9Y6N9 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.54□□□□□ -2
USH1CQ9Y6N9 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH1CQ9Y6N9 RNU5D-1-201ENST00000363299 116 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH1CQ9Y6N9 AL121978.1-201ENST00000402778 359 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AL162578.1-201ENST00000406202 378 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 RNA5SP21-201ENST00000410917 96 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 RPS15AP38-201ENST00000413110 372 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 EEF1A1P41-201ENST00000414667 207 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC008173.1-201ENST00000418901 264 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 USP9YP20-201ENST00000419224 558 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 HMGN2P30-201ENST00000423237 256 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 TMEM167AP1-201ENST00000423409 219 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC2.53□□□□□ -2
USH1CQ9Y6N9 RPL23AP16-201ENST00000441715 421 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 NANOGNBP1-201ENST00000448444 480 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 NDUFA5P7-201ENST00000452914 242 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC011825.1-201ENST00000484967 388 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC2.53□□□□□ -2
USH1CQ9Y6N9 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC010625.1-201ENST00000511296 403 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 RAC1P5-201ENST00000512182 576 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.53□□□□□ -2
USH1CQ9Y6N9 RNA5SP282-201ENST00000516355 108 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC087373.1-201ENST00000524920 491 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC022080.3-201ENST00000544433 482 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 EEF1B2P4-201ENST00000551398 348 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.53□□□□□ -2
USH1CQ9Y6N9 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC020895.1-201ENST00000595362 272 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AL451007.1-201ENST00000595491 289 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC2.53□□□□□ -2
USH1CQ9Y6N9 OR4H6P-202ENST00000603819 340 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AC024560.3-201ENST00000608482 349 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AL353748.2-201ENST00000622148 471 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 AL365361.1-201ENST00000566942 3481 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 NUP58P1-201ENST00000502546 1738 ntBASIC2.53□□□□□ -2
USH1CQ9Y6N9 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
USH1CQ9Y6N9 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USH1CQ9Y6N9 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms