Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AL110115.1-201ENST00000614396 364 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AL355810.1-201ENST00000614629 552 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 DDX43P2-201ENST00000604753 1354 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AL356473.1-201ENST00000406203 1408 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AC104454.1-201ENST00000421341 1401 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 ZNF826P-207ENST00000622273 1910 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 RPL7P26-201ENST00000333817 754 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 MIR30E-201ENST00000362104 92 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 RNU1-70P-201ENST00000362618 164 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 TAS2R15P-201ENST00000390674 928 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AL356968.1-201ENST00000416622 474 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 MTATP6P27-201ENST00000416987 621 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 RPL21P32-201ENST00000419877 477 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 YWHAZP7-201ENST00000436906 631 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AL008629.1-201ENST00000438615 184 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 TXNP1-201ENST00000441872 371 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 SSXP4-201ENST00000451349 245 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 snoU13.22-201ENST00000459428 104 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 MEMO1P3-201ENST00000459811 302 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AC012181.1-201ENST00000479895 423 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AC093677.1-201ENST00000514414 678 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 SNORA3.4-201ENST00000515969 96 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AP003461.1-201ENST00000528866 78 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 UBE2NP1-201ENST00000545592 458 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AC090888.2-201ENST00000559765 1144 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 RPL21P12-201ENST00000559810 515 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 CKS1BP3-201ENST00000600888 237 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AL353778.1-201ENST00000603149 408 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AL596327.1-201ENST00000603629 213 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 MIR8058-201ENST00000615737 89 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AL607023.1-201ENST00000620045 248 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AL445264.1-201ENST00000621719 171 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 AC079228.1-201ENST00000624774 1049 ntBASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.6□□□□□ -1.83
CPSF3Q9UKF6 SGO1P2-201ENST00000429458 1589 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AL391994.1-201ENST00000254724 282 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 RNU6-777P-201ENST00000364265 104 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 RNU6-1200P-201ENST00000384162 107 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC006946.1-201ENST00000429106 328 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 MUPP-201ENST00000438111 566 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 MTCYBP31-201ENST00000438855 1122 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 MTND5P14-201ENST00000441481 1267 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AL606662.1-201ENST00000445763 553 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 Z75741.1-201ENST00000446793 314 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC104978.1-201ENST00000449387 391 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 MRPS31P2-201ENST00000451581 518 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AL109741.2-201ENST00000455561 343 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC004263.1-201ENST00000479327 332 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 COX7A2P2-201ENST00000505291 250 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC015917.1-201ENST00000579654 510 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 MIR4425-201ENST00000580572 84 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 MIR4999-201ENST00000585029 91 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC006254.3-201ENST00000603353 884 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC004987.4-201ENST00000603383 338 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC011816.2-201ENST00000607089 556 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 172.9 ms