Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 ARL5AP3-201ENST00000439327 386 ntBASIC1.96□□□□□ -2.1
SCN3AQ9NY46 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 AC026464.5-201ENST00000562497 722 ntBASIC1.96□□□□□ -2.1
SCN3AQ9NY46 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 AL109653.1-201ENST00000603091 248 ntBASIC1.96□□□□□ -2.1
SCN3AQ9NY46 AC004696.1-201ENST00000614345 607 ntBASIC1.96□□□□□ -2.1
SCN3AQ9NY46 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 AC012321.1-201ENST00000561622 1588 ntBASIC1.96□□□□□ -2.1
SCN3AQ9NY46 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 AL513331.1-201ENST00000411908 397 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC109780.2-201ENST00000413467 845 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC005005.2-201ENST00000420779 380 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 RFESDP1-201ENST00000422350 461 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 HIGD1AP11-201ENST00000438361 280 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 CBWD4P-201ENST00000445695 655 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AL034418.1-201ENST00000448675 860 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 OR51B8P-201ENST00000449892 769 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 MTCO3P11-201ENST00000455103 774 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 RPS26P21-201ENST00000475397 348 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC107398.1-201ENST00000486904 505 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC008885.2-201ENST00000509506 930 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 REXO2-218ENST00000544827 880 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC090751.1-201ENST00000566966 267 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC009318.2-201ENST00000610917 651 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 RBM12B-AS1-201ENST00000623283 653 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 MTND4P31-201ENST00000425607 1343 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 RPL19P1-201ENST00000411635 428 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 SNRPEP4-201ENST00000435815 279 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 FDX1P2-201ENST00000450769 375 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 RPL23AP23-201ENST00000452590 471 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 RPS4XP6-201ENST00000477670 797 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC068587.2-201ENST00000478386 781 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 FAM172BP-201ENST00000487497 1089 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 RNU1-40P-201ENST00000516816 164 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 RNU1-97P-201ENST00000516872 164 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 SNORD59.2-201ENST00000516873 68 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 OR10V3P-201ENST00000525712 725 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC074029.2-201ENST00000551045 634 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC103810.1-201ENST00000579873 453 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 COX6CP3-201ENST00000580869 223 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 GLUD1P4-201ENST00000590914 418 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AC002984.1-201ENST00000591692 448 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 AL121594.5-201ENST00000631724 573 ntBASIC1.95□□□□□ -2.1
SCN3AQ9NY46 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC1.95□□□□□ -2.1
SCN3AQ9NY46 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC1.94□□□□□ -2.1
SCN3AQ9NY46 RNA5SP492-201ENST00000411330 114 ntBASIC1.94□□□□□ -2.1
SCN3AQ9NY46 MTCO3P4-201ENST00000419236 787 ntBASIC1.94□□□□□ -2.1
SCN3AQ9NY46 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC1.94□□□□□ -2.1
SCN3AQ9NY46 RPS24P6-201ENST00000452670 400 ntBASIC1.94□□□□□ -2.1
SCN3AQ9NY46 RPL30P9-201ENST00000465586 330 ntBASIC1.94□□□□□ -2.1
SCN3AQ9NY46 RPL23AP55-201ENST00000498163 452 ntBASIC1.94□□□□□ -2.1
SCN3AQ9NY46 FABP5P6-201ENST00000510588 409 ntBASIC1.94□□□□□ -2.1
SCN3AQ9NY46 AC022616.2-201ENST00000523185 300 ntBASIC1.94□□□□□ -2.1
SCN3AQ9NY46 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC1.94□□□□□ -2.1
SCN3AQ9NY46 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.94□□□□□ -2.1
SCN3AQ9NY46 BNIP3P10-201ENST00000605360 577 ntBASIC1.94□□□□□ -2.1
SCN3AQ9NY46 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.94□□□□□ -2.1
SCN3AQ9NY46 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SCN3AQ9NY46 SNORA14A-201ENST00000364773 135 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 RNA5SP160-201ENST00000364866 120 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 MIR504-201ENST00000385065 83 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 RNU2-2P-201ENST00000410396 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 AC092447.6-201ENST00000414578 210 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 NDUFB4P6-201ENST00000436819 366 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 ELOCP13-201ENST00000443934 329 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC1.93□□□□□ -2.1
SCN3AQ9NY46 RPS29P12-201ENST00000460178 152 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 RNU6-1073P-201ENST00000517182 106 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 IGKV3-31-201ENST00000523109 329 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC1.93□□□□□ -2.1
SCN3AQ9NY46 AC135628.1-201ENST00000568867 534 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.93□□□□□ -2.1
SCN3AQ9NY46 AC025754.2-201ENST00000606491 432 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.15-201ENST00000611544 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.16-201ENST00000613119 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.12-201ENST00000613778 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.20-201ENST00000613956 192 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.9-201ENST00000615427 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.11-201ENST00000616345 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.2-201ENST00000616535 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.3-201ENST00000617785 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.19-201ENST00000618602 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 RNU2-1-201ENST00000618664 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.6-201ENST00000619225 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.5-201ENST00000619465 191 ntBASIC1.93□□□□□ -2.1
SCN3AQ9NY46 U2.10-201ENST00000620268 191 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms