Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.52□□□□□ -1.53
DEPDC4Q8N2C3 SNX18P12-201ENST00000624821 759 ntBASIC5.52□□□□□ -1.53
DEPDC4Q8N2C3 Z99571.1-201ENST00000636677 394 ntBASIC5.52□□□□□ -1.53
DEPDC4Q8N2C3 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
DEPDC4Q8N2C3 AC233263.6-201ENST00000631132 1963 ntBASIC5.52□□□□□ -1.53
DEPDC4Q8N2C3 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
DEPDC4Q8N2C3 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
DEPDC4Q8N2C3 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
DEPDC4Q8N2C3 AL138820.1-201ENST00000617901 5305 ntBASIC5.52□□□□□ -1.53
DEPDC4Q8N2C3 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
DEPDC4Q8N2C3 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 Y_RNA.350-201ENST00000365409 98 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 Y_RNA.461-201ENST00000384263 103 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 RN7SKP121-201ENST00000410842 305 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 MTCO1P39-201ENST00000426148 480 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AL592045.1-201ENST00000429867 352 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC099670.2-201ENST00000435130 321 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 PPIAP20-201ENST00000449839 135 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 MTCO3P8-201ENST00000453691 755 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 ACA64.4-201ENST00000459070 127 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 RNU6-1037P-201ENST00000459571 107 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC022493.1-201ENST00000492984 337 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 RNA5SP206-201ENST00000516703 121 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AL157871.3-201ENST00000557231 293 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 HMGB3P26-201ENST00000560051 582 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC022968.1-201ENST00000567372 442 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 RN7SL475P-201ENST00000583379 298 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC006363.1-201ENST00000603806 463 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AL133481.2-203ENST00000607558 139 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 AC005005.4-201ENST00000623789 16698 ntBASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
DEPDC4Q8N2C3 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC009962.1-201ENST00000567327 3813 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 GVINP1-202ENST00000531871 7271 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 OR56A5-201ENST00000340110 738 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AL513475.1-201ENST00000406602 315 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 MIR1302-6-201ENST00000408466 90 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AL096701.2-201ENST00000416920 238 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 RPS4XP5-201ENST00000419038 768 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC138761.5-201ENST00000433967 325 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 GAPDHP59-201ENST00000435908 267 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 RANP8-201ENST00000444720 713 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC073587.1-201ENST00000447093 876 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 FCF1P4-201ENST00000448326 183 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC133473.1-201ENST00000455173 299 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 RNU6-1132P-201ENST00000459214 107 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 HMGN1P11-201ENST00000508668 303 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 HSD3BP3-201ENST00000514706 994 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 RNU6-911P-201ENST00000516523 104 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC015720.2-201ENST00000567709 334 ntBASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC5.5□□□□□ -1.53
DEPDC4Q8N2C3 AC008555.7-201ENST00000605008 583 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms