Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AL353662.3-201ENST00000625131 237 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
NPAS3Q8IXF0 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.71□□□□□ -1.49
NPAS3Q8IXF0 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.71□□□□□ -1.49
NPAS3Q8IXF0 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.49
NPAS3Q8IXF0 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
NPAS3Q8IXF0 AL137141.1-201ENST00000624622 4836 ntBASIC5.71□□□□□ -1.49
NPAS3Q8IXF0 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
NPAS3Q8IXF0 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 TRIM51GP-201ENST00000534741 1350 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 Y_RNA.127-201ENST00000363386 109 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 RNU6-715P-201ENST00000365204 103 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 RNU5E-6P-201ENST00000365574 115 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 RNU6-434P-201ENST00000384376 107 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 RNU6-102P-201ENST00000384485 104 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 DBIP1-201ENST00000401435 260 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 Y_RNA.592-201ENST00000410274 109 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 RNU5E-9P-201ENST00000411164 104 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AC007161.1-204ENST00000423039 460 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AL596266.1-201ENST00000448132 400 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AC073850.1-201ENST00000449243 255 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AL161747.1-201ENST00000480068 358 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AC021382.1-201ENST00000483523 359 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 NDUFB5P1-201ENST00000508134 564 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 RPL10P14-201ENST00000565265 298 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 OR1F2P-201ENST00000570470 933 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AC009127.3-201ENST00000570531 403 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AC069307.1-201ENST00000602820 447 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AL591926.4-201ENST00000616895 298 ntBASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.71□□□□□ -1.5
NPAS3Q8IXF0 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AL359955.1-201ENST00000455242 3275 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AP002512.4-202ENST00000641599 4530 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 SNORD113-8-201ENST00000363497 74 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 SNORA51.6-201ENST00000384151 125 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AL109941.1-201ENST00000401925 229 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 RNA5SP111-201ENST00000411386 101 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 UBE2V1P4-201ENST00000425374 344 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AL590399.2-201ENST00000427536 309 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AL590233.1-201ENST00000430017 456 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AC092162.1-201ENST00000432828 434 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 RPL36AP6-201ENST00000435770 321 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AL772161.1-201ENST00000439130 476 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AC006967.1-201ENST00000467608 589 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 Y_RNA.679-201ENST00000516416 91 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 RN7SKP66-201ENST00000516681 231 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 RNU6-971P-201ENST00000516920 106 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 CYCSP27-201ENST00000527643 293 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AC022884.3-201ENST00000579571 248 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 MIR4420-201ENST00000583944 77 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AP002799.1-201ENST00000623552 423 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AC097063.1-201ENST00000426714 1797 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 AC093909.5-201ENST00000621839 1799 ntBASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NPAS3Q8IXF0 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.69□□□□□ -1.5
NPAS3Q8IXF0 Z95114.1-201ENST00000624264 14574 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms