Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 ZNF680P1-201ENST00000436625 1469 ntBASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC28AQ8IWP9 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RNY4P14-201ENST00000363656 96 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RNU1-44P-201ENST00000384453 163 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-606P-201ENST00000384721 111 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 MIR600-201ENST00000385007 98 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 NDUFS5P1-201ENST00000405668 289 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 MIR1290-201ENST00000408735 78 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 OR3A2-201ENST00000408891 1076 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RNU2-9P-201ENST00000410194 145 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RPS23P10-201ENST00000416185 486 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC018630.2-202ENST00000422992 927 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AL121776.1-201ENST00000429337 372 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RBMY2QP-201ENST00000429799 1147 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 MRPS10P2-201ENST00000431226 381 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 HMGB3P12-201ENST00000438745 556 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RPS15AP9-201ENST00000439856 381 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RPS29P9-201ENST00000440360 171 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 DDX3P2-201ENST00000446138 111 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AL389915.2-201ENST00000454576 441 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RPS21P4-201ENST00000487122 248 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RPL7P47-201ENST00000497299 556 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC026427.2-201ENST00000506228 536 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC017037.1-201ENST00000508460 471 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC093824.1-201ENST00000508796 343 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AL359273.1-201ENST00000510918 627 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 NDUFB4P9-201ENST00000511646 388 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 SCARNA21.2-201ENST00000516600 166 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-1178P-201ENST00000516674 107 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AP001646.1-201ENST00000527936 915 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AK6P1-201ENST00000540219 478 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RPS3AP4-201ENST00000555161 764 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC025678.1-201ENST00000567861 338 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 RPL23AP87-202ENST00000573039 466 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC005951.2-201ENST00000576282 495 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 SNORA59B-202ENST00000578183 701 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 MIR3690-201ENST00000580266 75 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC007621.1-201ENST00000604544 437 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AL713922.2-201ENST00000619384 716 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 MIR3688-2-201ENST00000636963 87 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 AL049767.1-202ENST00000637826 242 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 MAPK10-263ENST00000641052 4307 ntBASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC28AQ8IWP9 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 RNU6-188P-201ENST00000364207 107 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 Y_RNA.248-201ENST00000364501 109 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 RNU4-48P-201ENST00000365559 182 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC009237.5-201ENST00000414271 501 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 RPL27AP8-201ENST00000424277 446 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 ELOCP14-201ENST00000428070 331 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AL139415.2-201ENST00000431968 163 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 MTATP6P16-201ENST00000434543 526 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 RPL7P54-201ENST00000438336 674 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 ELOCP7-201ENST00000439968 331 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC020550.1-201ENST00000447385 163 ntBASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC28AQ8IWP9 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 271.5 ms