Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.5□□□□□ -2.01
USP54Q70EL1 RPL23AP78-201ENST00000599928 470 ntBASIC2.5□□□□□ -2.01
USP54Q70EL1 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
USP54Q70EL1 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC2.49□□□□□ -2.01
USP54Q70EL1 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.49□□□□□ -2.01
USP54Q70EL1 AC012321.1-201ENST00000561622 1588 ntBASIC2.49□□□□□ -2.01
USP54Q70EL1 Y_RNA.116-201ENST00000363292 103 ntBASIC2.49□□□□□ -2.01
USP54Q70EL1 Y_RNA.466-201ENST00000384294 113 ntBASIC2.49□□□□□ -2.01
USP54Q70EL1 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.49□□□□□ -2.01
USP54Q70EL1 BTF3P4-201ENST00000418852 495 ntBASIC2.49□□□□□ -2.01
USP54Q70EL1 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.49□□□□□ -2.01
USP54Q70EL1 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.49□□□□□ -2.01
USP54Q70EL1 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.49□□□□□ -2.01
USP54Q70EL1 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC2.49□□□□□ -2.01
USP54Q70EL1 RPL21P103-201ENST00000479921 488 ntBASIC2.49□□□□□ -2.01
USP54Q70EL1 AC126177.3-201ENST00000551839 688 ntBASIC2.49□□□□□ -2.01
USP54Q70EL1 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.49□□□□□ -2.01
USP54Q70EL1 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.49□□□□□ -2.01
USP54Q70EL1 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.49□□□□□ -2.01
USP54Q70EL1 AL161912.3-201ENST00000605404 628 ntBASIC2.49□□□□□ -2.01
USP54Q70EL1 RPL23AP88-201ENST00000605759 454 ntBASIC2.49□□□□□ -2.01
USP54Q70EL1 AC016877.3-201ENST00000606778 504 ntBASIC2.49□□□□□ -2.01
USP54Q70EL1 MIR518E-201ENST00000385252 88 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 HMGB1P13-201ENST00000406019 642 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 AL513331.1-201ENST00000411908 397 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC2.48□□□□□ -2.01
USP54Q70EL1 HIGD1AP11-201ENST00000438361 280 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 XKRY2-201ENST00000442362 1093 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 snoU13.18-201ENST00000459483 104 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 AC140059.1-201ENST00000489238 361 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 RNU2-58P-201ENST00000516403 183 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 CBX3P4-201ENST00000538909 354 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 NDUFA5P6-201ENST00000542110 379 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 RPS3AP23-202ENST00000574601 686 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 AC121761.2-201ENST00000617300 689 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 AC007256.1-201ENST00000392253 2765 ntBASIC2.48□□□□□ -2.01
USP54Q70EL1 MTCYBP7-201ENST00000419540 1134 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 TAF9P1-201ENST00000445421 515 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 RPL23AP20-201ENST00000447965 421 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 TAF9P2-201ENST00000454958 515 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 AC092451.1-201ENST00000480211 153 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 RPL23AP63-201ENST00000498752 471 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 MTCO1P30-201ENST00000515244 580 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC2.47□□□□□ -2.01
USP54Q70EL1 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.47□□□□□ -2.01
USP54Q70EL1 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.47□□□□□ -2.01
USP54Q70EL1 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC2.47□□□□□ -2.01
USP54Q70EL1 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC2.47□□□□□ -2.01
USP54Q70EL1 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
USP54Q70EL1 AC103988.1-201ENST00000566382 2177 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
USP54Q70EL1 UBE2L2-201ENST00000254302 429 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
USP54Q70EL1 RNA5SP37-201ENST00000365420 130 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 Y_RNA.540-201ENST00000384638 111 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 MIR591-201ENST00000385290 95 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 FGF7P8-201ENST00000402994 292 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 RNU2-37P-201ENST00000410695 177 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 ELOCP6-201ENST00000429066 328 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 ELOCP12-201ENST00000458706 328 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 SNRPGP3-201ENST00000469405 227 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 RN7SKP96-201ENST00000516948 297 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 snoZ278.1-201ENST00000517059 112 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 COX6CP5-201ENST00000527162 228 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 AP003385.6-201ENST00000531603 374 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
USP54Q70EL1 SUB1P3-201ENST00000564581 315 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 DUXAP3-201ENST00000603616 594 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 AC011468.4-201ENST00000603942 409 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 AC011890.2-201ENST00000613393 294 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 OR1S1-201ENST00000624470 978 ntBASIC2.47□□□□□ -2.01
USP54Q70EL1 AL139276.1-201ENST00000311910 1001 ntBASIC2.46□□□□□ -2.02
USP54Q70EL1 VTRNA1-1-201ENST00000363120 99 ntBASIC2.46□□□□□ -2.02
USP54Q70EL1 Y_RNA.355-201ENST00000365462 98 ntBASIC2.46□□□□□ -2.02
USP54Q70EL1 RPS7P5-201ENST00000441482 581 ntBASIC2.46□□□□□ -2.02
USP54Q70EL1 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC2.46□□□□□ -2.02
USP54Q70EL1 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
USP54Q70EL1 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.46□□□□□ -2.02
USP54Q70EL1 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.46□□□□□ -2.02
USP54Q70EL1 AL356280.1-201ENST00000603614 379 ntBASIC2.46□□□□□ -2.02
USP54Q70EL1 RNA5SP108-201ENST00000605921 117 ntBASIC2.46□□□□□ -2.02
USP54Q70EL1 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.46□□□□□ -2.02
USP54Q70EL1 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
USP54Q70EL1 SNORA51.11-201ENST00000384442 131 ntBASIC2.45□□□□□ -2.02
USP54Q70EL1 SNORA67.5-201ENST00000391036 107 ntBASIC2.45□□□□□ -2.02
USP54Q70EL1 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.45□□□□□ -2.02
USP54Q70EL1 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC2.45□□□□□ -2.02
USP54Q70EL1 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.45□□□□□ -2.02
USP54Q70EL1 RPS26P21-201ENST00000475397 348 ntBASIC2.45□□□□□ -2.02
USP54Q70EL1 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC2.45□□□□□ -2.02
USP54Q70EL1 RNU4-60P-201ENST00000517239 135 ntBASIC2.45□□□□□ -2.02
USP54Q70EL1 HMGB1P1-201ENST00000522557 636 ntBASIC2.45□□□□□ -2.02
USP54Q70EL1 OR6C73P-201ENST00000546432 358 ntBASIC2.45□□□□□ -2.02
USP54Q70EL1 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.45□□□□□ -2.02
USP54Q70EL1 AL121917.1-203ENST00000605534 577 ntBASIC2.45□□□□□ -2.02
USP54Q70EL1 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.45□□□□□ -2.02
USP54Q70EL1 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
USP54Q70EL1 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
USP54Q70EL1 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms