Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CYCSP30-201ENST00000546447 172 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AL133241.1-201ENST00000556832 487 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 BNIP3P5-201ENST00000562290 498 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 MIR544B-201ENST00000582372 78 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC244505.7-201ENST00000599675 272 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AL606834.2-201ENST00000602954 668 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC112191.3-201ENST00000604371 277 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AP002360.4-201ENST00000606980 481 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AL161637.1-201ENST00000622380 412 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC091905.1-201ENST00000624400 311 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 U6.101-201ENST00000637707 76 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AP002907.1-201ENST00000606361 1430 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 XIAPP3-201ENST00000312918 795 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 RPL23AP57-201ENST00000332361 466 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 RNA5SP124-201ENST00000362739 110 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 RNU6-1283P-201ENST00000365314 105 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 SNORA51.6-201ENST00000384151 125 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 RNU6-339P-201ENST00000384310 107 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 MIR134-201ENST00000385258 73 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 RN7SKP156-201ENST00000410308 342 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 CYCSP19-201ENST00000411715 316 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 TPMTP2-201ENST00000414372 726 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 RPL36AP36-201ENST00000418616 301 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AL513174.1-201ENST00000423182 629 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AL035410.1-201ENST00000427409 427 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 LSM1P1-201ENST00000438629 273 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 PAXBP1P1-201ENST00000449315 447 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 FGF7P6-202ENST00000451282 293 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 FAM172BP-201ENST00000487497 1089 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AC078817.1-201ENST00000492623 435 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AF131216.2-201ENST00000512316 564 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 NARSP2-201ENST00000518524 679 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AC025946.2-201ENST00000603398 234 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AP001506.1-201ENST00000615444 211 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 OR5AK4P-201ENST00000635912 903 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 MAPK10-373ENST00000641983 6772 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS53Q5VIR6 MAPK10-372ENST00000641954 3413 ntBASIC4.53□□□□□ -1.68
VPS53Q5VIR6 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 RNY4P24-201ENST00000362735 96 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 RNU1-64P-201ENST00000365443 163 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 Y_RNA.493-201ENST00000384422 102 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 RNU6-837P-201ENST00000391056 108 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 HSPE1P8-201ENST00000406997 288 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AL603766.1-201ENST00000407763 664 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 HMGB3P23-201ENST00000414981 585 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 UBE2V1P8-201ENST00000437166 265 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 SKP1P1-201ENST00000438081 489 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 MTATP6P23-201ENST00000440153 476 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 RBMX2P4-201ENST00000441256 376 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 MTND5P14-201ENST00000441481 1267 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 RPS20P32-201ENST00000456044 356 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms