Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TXNP1-201ENST00000441872 371 ntBASIC4.82□□□□□ -1.64
RNF4P78317 AC104058.1-201ENST00000448028 297 ntBASIC4.82□□□□□ -1.64
RNF4P78317 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF4P78317 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF4P78317 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC4.82□□□□□ -1.64
RNF4P78317 AC012158.1-204ENST00000483430 465 ntBASIC4.82□□□□□ -1.64
RNF4P78317 RN7SL814P-201ENST00000487715 300 ntBASIC4.82□□□□□ -1.64
RNF4P78317 AP001086.1-201ENST00000494882 321 ntBASIC4.82□□□□□ -1.64
RNF4P78317 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.82□□□□□ -1.64
RNF4P78317 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 AF186190.1-201ENST00000517470 480 ntBASIC4.82□□□□□ -1.64
RNF4P78317 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.82□□□□□ -1.64
RNF4P78317 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF4P78317 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF4P78317 MIR3691-201ENST00000578066 90 ntBASIC4.82□□□□□ -1.64
RNF4P78317 MIR5692C1-201ENST00000585309 91 ntBASIC4.82□□□□□ -1.64
RNF4P78317 AC067852.4-201ENST00000590314 478 ntBASIC4.82□□□□□ -1.64
RNF4P78317 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF4P78317 AL158196.1-201ENST00000616786 434 ntBASIC4.82□□□□□ -1.64
RNF4P78317 MIR6839-201ENST00000620425 113 ntBASIC4.82□□□□□ -1.64
RNF4P78317 MIR6719-201ENST00000622428 87 ntBASIC4.82□□□□□ -1.64
RNF4P78317 AC243312.2-201ENST00000623340 601 ntBASIC4.82□□□□□ -1.64
RNF4P78317 AC138305.3-201ENST00000624988 240 ntBASIC4.82□□□□□ -1.64
RNF4P78317 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
RNF4P78317 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RNF4P78317 AC114947.2-201ENST00000565748 2125 ntBASIC4.82□□□□□ -1.64
RNF4P78317 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RNF4P78317 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.82□□□□□ -1.64
RNF4P78317 AL450326.2-201ENST00000421913 1962 ntBASIC4.82□□□□□ -1.64
RNF4P78317 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RNF4P78317 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.81□□□□□ -1.64
RNF4P78317 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
RNF4P78317 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RNF4P78317 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.81□□□□□ -1.64
RNF4P78317 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.81□□□□□ -1.64
RNF4P78317 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
RNF4P78317 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.81□□□□□ -1.64
RNF4P78317 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RNF4P78317 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.81□□□□□ -1.64
RNF4P78317 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
RNF4P78317 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RNF4P78317 RNU6-562P-201ENST00000362731 107 ntBASIC4.81□□□□□ -1.64
RNF4P78317 RNA5SP507-201ENST00000363603 121 ntBASIC4.81□□□□□ -1.64
RNF4P78317 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RNF4P78317 Y_RNA.473-201ENST00000384333 102 ntBASIC4.81□□□□□ -1.64
RNF4P78317 AL360182.1-201ENST00000397433 468 ntBASIC4.81□□□□□ -1.64
RNF4P78317 MIR1250-201ENST00000408098 113 ntBASIC4.81□□□□□ -1.64
RNF4P78317 RPS12P24-201ENST00000412619 387 ntBASIC4.81□□□□□ -1.64
RNF4P78317 AC092809.3-201ENST00000415453 231 ntBASIC4.81□□□□□ -1.64
RNF4P78317 SSXP9-201ENST00000417503 292 ntBASIC4.81□□□□□ -1.64
RNF4P78317 AL137014.1-201ENST00000420490 1226 ntBASIC4.81□□□□□ -1.64
RNF4P78317 AC099677.1-201ENST00000420575 175 ntBASIC4.81□□□□□ -1.64
RNF4P78317 RPL21P109-201ENST00000422213 475 ntBASIC4.81□□□□□ -1.64
RNF4P78317 ELOCP18-201ENST00000434209 337 ntBASIC4.81□□□□□ -1.64
RNF4P78317 RPL7P28-201ENST00000437739 740 ntBASIC4.81□□□□□ -1.64
RNF4P78317 GAPDHP58-201ENST00000438477 1006 ntBASIC4.81□□□□□ -1.64
RNF4P78317 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.81□□□□□ -1.64
RNF4P78317 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.81□□□□□ -1.64
RNF4P78317 RPL7P23-201ENST00000493874 747 ntBASIC4.81□□□□□ -1.64
RNF4P78317 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.81□□□□□ -1.64
RNF4P78317 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.81□□□□□ -1.64
RNF4P78317 AC027308.1-201ENST00000517993 110 ntBASIC4.81□□□□□ -1.64
RNF4P78317 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.81□□□□□ -1.64
RNF4P78317 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.81□□□□□ -1.64
RNF4P78317 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.81□□□□□ -1.64
RNF4P78317 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.81□□□□□ -1.64
RNF4P78317 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.81□□□□□ -1.64
RNF4P78317 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.81□□□□□ -1.64
RNF4P78317 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.81□□□□□ -1.64
RNF4P78317 RN7SL290P-201ENST00000578661 300 ntBASIC4.81□□□□□ -1.64
RNF4P78317 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.81□□□□□ -1.64
RNF4P78317 AC011447.4-201ENST00000587562 111 ntBASIC4.81□□□□□ -1.64
RNF4P78317 AC005014.2-201ENST00000607795 599 ntBASIC4.81□□□□□ -1.64
RNF4P78317 RPSAP73-201ENST00000614820 330 ntBASIC4.81□□□□□ -1.64
RNF4P78317 MIR6128-201ENST00000615528 109 ntBASIC4.81□□□□□ -1.64
RNF4P78317 AC118658.2-201ENST00000618697 459 ntBASIC4.81□□□□□ -1.64
RNF4P78317 AC010378.1-201ENST00000619270 362 ntBASIC4.81□□□□□ -1.64
RNF4P78317 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.81□□□□□ -1.64
RNF4P78317 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.81□□□□□ -1.64
RNF4P78317 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RNF4P78317 MTCO1P24-201ENST00000515438 1558 ntBASIC4.81□□□□□ -1.64
RNF4P78317 MAPK10-349ENST00000641767 3661 ntBASIC4.81□□□□□ -1.64
RNF4P78317 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
RNF4P78317 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.81□□□□□ -1.64
RNF4P78317 SAGE2P-201ENST00000420011 2126 ntBASIC4.81□□□□□ -1.64
RNF4P78317 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RNF4P78317 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
RNF4P78317 AC005332.5-201ENST00000591222 2919 ntBASIC4.8□□□□□ -1.64
RNF4P78317 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.8□□□□□ -1.64
RNF4P78317 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
RNF4P78317 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.8□□□□□ -1.64
RNF4P78317 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
RNF4P78317 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
RNF4P78317 RNU6-715P-201ENST00000365204 103 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms