Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC4□□□□□ -1.77
HOXC9P31274 AC130650.2-201ENST00000618736 2403 ntBASIC4□□□□□ -1.77
HOXC9P31274 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXC9P31274 RN7SKP44-201ENST00000363602 316 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 MIR124-3-201ENST00000384866 87 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXC9P31274 PIGPP2-201ENST00000411569 458 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXC9P31274 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXC9P31274 BX679664.1-201ENST00000434429 253 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 AL606662.1-201ENST00000445763 553 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 MTND2P19-201ENST00000449129 1012 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 AC108938.1-201ENST00000451204 136 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXC9P31274 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXC9P31274 HMGN1P18-201ENST00000457642 277 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 BZW1P2-201ENST00000473537 826 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXC9P31274 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXC9P31274 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXC9P31274 MTCYBP43-201ENST00000513621 740 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 RNU6-232P-201ENST00000517144 64 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 AC087373.1-201ENST00000524920 491 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXC9P31274 AC090888.1-201ENST00000561335 1141 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXC9P31274 AC012435.1-202ENST00000568772 240 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 AC090616.2-202ENST00000584248 222 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 ELOCP29-201ENST00000588193 334 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 AC083899.3-201ENST00000603413 594 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 AL603755.1-201ENST00000619504 163 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 MIR4496-201ENST00000635896 61 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 PNPT1P2-201ENST00000456768 2050 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 AC011978.2-201ENST00000569835 2054 ntBASIC3.99□□□□□ -1.77
HOXC9P31274 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXC9P31274 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXC9P31274 AL356489.2-201ENST00000566968 3528 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
HOXC9P31274 AP002907.1-201ENST00000606361 1430 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXC9P31274 AL391994.1-201ENST00000254724 282 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 SNORD116-2-201ENST00000384274 95 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 SNORD116-6-201ENST00000384711 96 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
HOXC9P31274 AL121972.1-201ENST00000402023 252 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 AL024474.1-201ENST00000404655 591 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXC9P31274 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXC9P31274 AC009518.2-201ENST00000418056 731 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 RPS12P5-201ENST00000423449 371 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 RPS6P12-201ENST00000432491 726 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXC9P31274 OR6C5P-201ENST00000452388 923 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXC9P31274 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXC9P31274 AC010486.3-201ENST00000511602 785 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXC9P31274 RNU6-150P-201ENST00000516237 95 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 MIR2114-201ENST00000516645 80 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
HOXC9P31274 MTCO1P47-201ENST00000523889 1271 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 OR5G4P-201ENST00000525251 760 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXC9P31274 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXC9P31274 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXC9P31274 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXC9P31274 CYCSP2-201ENST00000558168 301 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXC9P31274 MIR4319-201ENST00000577285 85 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 AP001180.3-201ENST00000582221 145 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXC9P31274 OR4G1P-201ENST00000588632 938 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXC9P31274 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 ATP1B3P1-201ENST00000605365 821 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 AC079248.2-201ENST00000623779 326 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 AC079228.1-201ENST00000624774 1049 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 MTND4P34-201ENST00000572715 1371 ntBASIC3.98□□□□□ -1.77
HOXC9P31274 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
HOXC9P31274 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXC9P31274 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXC9P31274 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXC9P31274 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXC9P31274 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
HOXC9P31274 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 MIR449A-201ENST00000362113 91 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 RNU6-374P-201ENST00000364146 108 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 MIR153-1-201ENST00000384914 90 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC9P31274 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXC9P31274 AL365203.2-201ENST00000423444 196 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC9P31274 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC9P31274 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC9P31274 AP000926.1-201ENST00000479573 241 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 AC012170.1-201ENST00000495139 359 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 TMEM251P1-201ENST00000503717 318 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 AC093767.1-201ENST00000504523 156 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms