Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PTPN4P29074 AC055876.1-202ENST00000567053 138 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.25□□□□□ -1.89
PTPN4P29074 MIR4760-201ENST00000585040 80 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.25□□□□□ -1.89
PTPN4P29074 VN1R92P-201ENST00000598511 928 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 BDH2P1-201ENST00000602288 736 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AC006557.5-201ENST00000603126 811 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 MTND3P19-201ENST00000603825 345 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 YPEL5P2-201ENST00000605553 359 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.25□□□□□ -1.89
PTPN4P29074 AC009974.1-201ENST00000608881 455 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AC243773.3-201ENST00000613270 256 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.25□□□□□ -1.89
PTPN4P29074 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.25□□□□□ -1.89
PTPN4P29074 AC091925.2-201ENST00000625059 256 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.25□□□□□ -1.89
PTPN4P29074 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.25□□□□□ -1.89
PTPN4P29074 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.25□□□□□ -1.89
PTPN4P29074 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.25□□□□□ -1.89
PTPN4P29074 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.25□□□□□ -1.89
PTPN4P29074 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
PTPN4P29074 MTND5P24-201ENST00000438892 1767 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AL079343.1-201ENST00000572358 1771 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.24□□□□□ -1.89
PTPN4P29074 AC109315.1-201ENST00000584143 1347 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 AL353743.1-202ENST00000431724 1695 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PTPN4P29074 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PTPN4P29074 OR5H2-201ENST00000355273 945 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
PTPN4P29074 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
PTPN4P29074 RNU6-906P-201ENST00000384700 70 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 SAR1AP2-201ENST00000392696 594 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PTPN4P29074 RN7SKP123-201ENST00000410732 291 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 AL161449.1-201ENST00000414531 1199 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 AL513175.2-201ENST00000422071 443 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.24□□□□□ -1.89
PTPN4P29074 EZH2P1-201ENST00000431167 291 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 MTND2P5-201ENST00000432656 1006 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 UQCRHP3-201ENST00000451503 251 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.24□□□□□ -1.89
PTPN4P29074 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.24□□□□□ -1.89
PTPN4P29074 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.24□□□□□ -1.89
PTPN4P29074 AC090453.1-201ENST00000495560 436 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 AC114322.1-201ENST00000506771 926 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 RNA5SP385-201ENST00000515947 110 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 SNORA31.1-201ENST00000515993 133 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 SNORA31.5-201ENST00000516190 133 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 RN7SKP31-201ENST00000516354 278 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.24□□□□□ -1.89
PTPN4P29074 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
PTPN4P29074 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.24□□□□□ -1.89
PTPN4P29074 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.24□□□□□ -1.89
PTPN4P29074 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PTPN4P29074 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.24□□□□□ -1.89
PTPN4P29074 AL132657.2-201ENST00000564417 358 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 OR4K7P-201ENST00000580232 945 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.24□□□□□ -1.89
PTPN4P29074 AC011471.1-201ENST00000585766 187 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.24□□□□□ -1.89
PTPN4P29074 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.24□□□□□ -1.89
PTPN4P29074 AF131215.7-201ENST00000602443 707 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 AL591516.1-201ENST00000611326 274 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 MIR7112-201ENST00000616126 65 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 MIR6076-201ENST00000617521 113 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 SNORD39.4-201ENST00000620099 78 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 MIR8057-201ENST00000620957 69 ntBASIC3.24□□□□□ -1.89
PTPN4P29074 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.24□□□□□ -1.89
PTPN4P29074 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.24□□□□□ -1.89
PTPN4P29074 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PTPN4P29074 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PTPN4P29074 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PTPN4P29074 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.23□□□□□ -1.89
PTPN4P29074 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
PTPN4P29074 MTATP6P27-201ENST00000416987 621 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 TIMM9P2-201ENST00000419324 266 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 MTATP6P4-201ENST00000427725 675 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 PSMA6P3-201ENST00000428242 164 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 AC004866.2-201ENST00000438285 481 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 AC140076.1-201ENST00000449897 361 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 AC104308.1-201ENST00000454621 333 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 AC005410.1-202ENST00000460347 485 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.23□□□□□ -1.89
PTPN4P29074 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PTPN4P29074 HMGB1P28-201ENST00000507778 552 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.23□□□□□ -1.89
PTPN4P29074 AC109445.1-201ENST00000512356 383 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 RNU6-1095P-201ENST00000516148 108 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.23□□□□□ -1.89
PTPN4P29074 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.23□□□□□ -1.89
PTPN4P29074 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PTPN4P29074 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.23□□□□□ -1.89
PTPN4P29074 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.23□□□□□ -1.89
PTPN4P29074 SETP7-201ENST00000552169 453 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 AADACP1-206ENST00000561502 1193 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 AC023813.2-201ENST00000564321 469 ntBASIC3.23□□□□□ -1.89
PTPN4P29074 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms