Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.85□□□□□ -1.79
BDNFP23560 AMZ2P1-203ENST00000565833 850 ntBASIC3.85□□□□□ -1.79
BDNFP23560 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.85□□□□□ -1.79
BDNFP23560 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.85□□□□□ -1.79
BDNFP23560 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.85□□□□□ -1.79
BDNFP23560 AC080013.3-201ENST00000606839 578 ntBASIC3.85□□□□□ -1.79
BDNFP23560 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.85□□□□□ -1.79
BDNFP23560 MIR486-1-201ENST00000612171 68 ntBASIC3.85□□□□□ -1.79
BDNFP23560 AC016597.2-201ENST00000613256 341 ntBASIC3.85□□□□□ -1.79
BDNFP23560 AC090132.2-201ENST00000615881 347 ntBASIC3.85□□□□□ -1.79
BDNFP23560 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.85□□□□□ -1.79
BDNFP23560 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
BDNFP23560 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.85□□□□□ -1.79
BDNFP23560 AC103798.2-201ENST00000624292 632 ntBASIC3.85□□□□□ -1.79
BDNFP23560 AC019226.1-201ENST00000625666 515 ntBASIC3.85□□□□□ -1.79
BDNFP23560 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.85□□□□□ -1.79
BDNFP23560 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.85□□□□□ -1.79
BDNFP23560 AC006927.4-201ENST00000639187 543 ntBASIC3.85□□□□□ -1.79
BDNFP23560 ZNF542P-204ENST00000482727 1305 ntBASIC3.85□□□□□ -1.79
BDNFP23560 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
BDNFP23560 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
BDNFP23560 AC007785.2-201ENST00000598627 1916 ntBASIC3.85□□□□□ -1.79
BDNFP23560 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
BDNFP23560 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.85□□□□□ -1.79
BDNFP23560 AC008669.1-201ENST00000565823 2178 ntBASIC3.85□□□□□ -1.79
BDNFP23560 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.84□□□□□ -1.79
BDNFP23560 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
BDNFP23560 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
BDNFP23560 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
BDNFP23560 AC010680.1-201ENST00000590024 3590 ntBASIC3.84□□□□□ -1.79
BDNFP23560 RNA5SP119-201ENST00000362715 117 ntBASIC3.84□□□□□ -1.79
BDNFP23560 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
BDNFP23560 RNU6-1035P-201ENST00000384477 107 ntBASIC3.84□□□□□ -1.79
BDNFP23560 RNU6-114P-201ENST00000384704 105 ntBASIC3.84□□□□□ -1.79
BDNFP23560 RPS3AP25-201ENST00000411660 793 ntBASIC3.84□□□□□ -1.79
BDNFP23560 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.84□□□□□ -1.79
BDNFP23560 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.84□□□□□ -1.79
BDNFP23560 HMGB1P49-201ENST00000418882 569 ntBASIC3.84□□□□□ -1.79
BDNFP23560 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.84□□□□□ -1.79
BDNFP23560 YME1L1P1-201ENST00000429435 297 ntBASIC3.84□□□□□ -1.79
BDNFP23560 RPL23AP69-201ENST00000431134 458 ntBASIC3.84□□□□□ -1.79
BDNFP23560 PDSS1P2-201ENST00000449397 678 ntBASIC3.84□□□□□ -1.79
BDNFP23560 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.84□□□□□ -1.79
BDNFP23560 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.84□□□□□ -1.79
BDNFP23560 RPS3AP50-201ENST00000487064 803 ntBASIC3.84□□□□□ -1.79
BDNFP23560 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.84□□□□□ -1.79
BDNFP23560 BTF3L4P4-201ENST00000506381 449 ntBASIC3.84□□□□□ -1.79
BDNFP23560 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.84□□□□□ -1.79
BDNFP23560 TPT1P8-201ENST00000510120 555 ntBASIC3.84□□□□□ -1.79
BDNFP23560 SNORA70.18-201ENST00000516696 98 ntBASIC3.84□□□□□ -1.79
BDNFP23560 RN7SKP209-201ENST00000516888 304 ntBASIC3.84□□□□□ -1.79
BDNFP23560 SNORA31.21-201ENST00000517180 77 ntBASIC3.84□□□□□ -1.79
BDNFP23560 RANP9-201ENST00000519957 271 ntBASIC3.84□□□□□ -1.79
BDNFP23560 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.84□□□□□ -1.79
BDNFP23560 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.84□□□□□ -1.79
BDNFP23560 CCNG2P1-201ENST00000549521 1000 ntBASIC3.84□□□□□ -1.79
BDNFP23560 AC087465.1-201ENST00000560574 245 ntBASIC3.84□□□□□ -1.79
BDNFP23560 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.84□□□□□ -1.79
BDNFP23560 AC034268.2-201ENST00000571784 482 ntBASIC3.84□□□□□ -1.79
BDNFP23560 AC020914.6-201ENST00000594327 272 ntBASIC3.84□□□□□ -1.79
BDNFP23560 AC022146.1-201ENST00000595307 847 ntBASIC3.84□□□□□ -1.79
BDNFP23560 AL158042.1-201ENST00000605338 460 ntBASIC3.84□□□□□ -1.79
BDNFP23560 AL603758.1-201ENST00000618654 241 ntBASIC3.84□□□□□ -1.79
BDNFP23560 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.84□□□□□ -1.79
BDNFP23560 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.84□□□□□ -1.79
BDNFP23560 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
BDNFP23560 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.79
BDNFP23560 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
BDNFP23560 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
BDNFP23560 AC009902.3-201ENST00000606235 2172 ntBASIC3.83□□□□□ -1.8
BDNFP23560 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
BDNFP23560 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
BDNFP23560 RNU1-105P-201ENST00000363470 161 ntBASIC3.83□□□□□ -1.8
BDNFP23560 SNORA4.1-201ENST00000364263 144 ntBASIC3.83□□□□□ -1.8
BDNFP23560 SNORA23-201ENST00000365128 182 ntBASIC3.83□□□□□ -1.8
BDNFP23560 RNU6-198P-201ENST00000384258 104 ntBASIC3.83□□□□□ -1.8
BDNFP23560 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
BDNFP23560 RN7SKP266-201ENST00000410232 287 ntBASIC3.83□□□□□ -1.8
BDNFP23560 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.83□□□□□ -1.8
BDNFP23560 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.83□□□□□ -1.8
BDNFP23560 AL451062.2-201ENST00000427515 271 ntBASIC3.83□□□□□ -1.8
BDNFP23560 AL390023.1-201ENST00000428836 262 ntBASIC3.83□□□□□ -1.8
BDNFP23560 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.83□□□□□ -1.8
BDNFP23560 AC129850.1-201ENST00000436203 508 ntBASIC3.83□□□□□ -1.8
BDNFP23560 ARPC3P1-201ENST00000437218 533 ntBASIC3.83□□□□□ -1.8
BDNFP23560 RPL23AP35-201ENST00000451906 501 ntBASIC3.83□□□□□ -1.8
BDNFP23560 AC073387.1-201ENST00000453261 709 ntBASIC3.83□□□□□ -1.8
BDNFP23560 DNAJC19P1-201ENST00000455312 319 ntBASIC3.83□□□□□ -1.8
BDNFP23560 AC099563.1-201ENST00000456086 418 ntBASIC3.83□□□□□ -1.8
BDNFP23560 SNORD105B-201ENST00000458770 79 ntBASIC3.83□□□□□ -1.8
BDNFP23560 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.83□□□□□ -1.8
BDNFP23560 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.83□□□□□ -1.8
BDNFP23560 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
BDNFP23560 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.83□□□□□ -1.8
BDNFP23560 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.83□□□□□ -1.8
BDNFP23560 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.83□□□□□ -1.8
BDNFP23560 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.83□□□□□ -1.8
BDNFP23560 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.83□□□□□ -1.8
BDNFP23560 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.83□□□□□ -1.8
BDNFP23560 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms