Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.58□□□□□ -2
USF1P22415 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.58□□□□□ -2
USF1P22415 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.58□□□□□ -2
USF1P22415 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.58□□□□□ -2
USF1P22415 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC2.58□□□□□ -2
USF1P22415 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
USF1P22415 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.57□□□□□ -2
USF1P22415 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
USF1P22415 AL035425.3-201ENST00000564206 4996 ntBASIC2.57□□□□□ -2
USF1P22415 UBE2Q2P1-202ENST00000354771 883 ntBASIC2.57□□□□□ -2
USF1P22415 RNU5B-4P-201ENST00000363508 111 ntBASIC2.57□□□□□ -2
USF1P22415 SNORA1.3-201ENST00000384676 136 ntBASIC2.57□□□□□ -2
USF1P22415 SNORA26.7-201ENST00000391288 122 ntBASIC2.57□□□□□ -2
USF1P22415 RPS4XP3-201ENST00000398541 413 ntBASIC2.57□□□□□ -2
USF1P22415 RPL7P27-201ENST00000403775 720 ntBASIC2.57□□□□□ -2
USF1P22415 OR2AS1P-201ENST00000427827 319 ntBASIC2.57□□□□□ -2
USF1P22415 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC2.57□□□□□ -2
USF1P22415 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.57□□□□□ -2
USF1P22415 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.57□□□□□ -2
USF1P22415 HMGB3P6-201ENST00000444896 598 ntBASIC2.57□□□□□ -2
USF1P22415 AL590664.1-201ENST00000448065 339 ntBASIC2.57□□□□□ -2
USF1P22415 USP9YP34-201ENST00000453983 808 ntBASIC2.57□□□□□ -2
USF1P22415 AC092757.1-201ENST00000467293 467 ntBASIC2.57□□□□□ -2
USF1P22415 AC104472.2-201ENST00000469035 601 ntBASIC2.57□□□□□ -2
USF1P22415 RPL30P14-201ENST00000482744 348 ntBASIC2.57□□□□□ -2
USF1P22415 AC093801.2-201ENST00000503966 1050 ntBASIC2.57□□□□□ -2
USF1P22415 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC2.57□□□□□ -2
USF1P22415 AC111000.2-201ENST00000507775 550 ntBASIC2.57□□□□□ -2
USF1P22415 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC2.57□□□□□ -2
USF1P22415 AC104417.1-201ENST00000523974 751 ntBASIC2.57□□□□□ -2
USF1P22415 OR4R2P-201ENST00000530815 597 ntBASIC2.57□□□□□ -2
USF1P22415 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC2.57□□□□□ -2
USF1P22415 SETP7-201ENST00000552169 453 ntBASIC2.57□□□□□ -2
USF1P22415 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.57□□□□□ -2
USF1P22415 AC027807.1-201ENST00000559921 996 ntBASIC2.57□□□□□ -2
USF1P22415 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.57□□□□□ -2
USF1P22415 LARP7P2-201ENST00000575306 125 ntBASIC2.57□□□□□ -2
USF1P22415 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
USF1P22415 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.57□□□□□ -2
USF1P22415 BNIP3P24-201ENST00000593398 557 ntBASIC2.57□□□□□ -2
USF1P22415 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.57□□□□□ -2
USF1P22415 AL035411.2-201ENST00000604022 421 ntBASIC2.57□□□□□ -2
USF1P22415 AL583856.2-201ENST00000606298 543 ntBASIC2.57□□□□□ -2
USF1P22415 AP001521.1-201ENST00000609150 300 ntBASIC2.57□□□□□ -2
USF1P22415 AL592148.2-201ENST00000612210 372 ntBASIC2.57□□□□□ -2
USF1P22415 AC018926.1-201ENST00000616335 435 ntBASIC2.57□□□□□ -2
USF1P22415 AP003122.6-201ENST00000623831 495 ntBASIC2.57□□□□□ -2
USF1P22415 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC2.57□□□□□ -2
USF1P22415 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.57□□□□□ -2
USF1P22415 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.57□□□□□ -2
USF1P22415 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
USF1P22415 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
USF1P22415 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
USF1P22415 MIR506-201ENST00000384998 124 ntBASIC2.56□□□□□ -2
USF1P22415 MIR493-201ENST00000385254 89 ntBASIC2.56□□□□□ -2
USF1P22415 RPL21P75-201ENST00000396599 483 ntBASIC2.56□□□□□ -2
USF1P22415 RPL21P28-201ENST00000401418 483 ntBASIC2.56□□□□□ -2
USF1P22415 AL592114.1-201ENST00000403842 483 ntBASIC2.56□□□□□ -2
USF1P22415 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC2.56□□□□□ -2
USF1P22415 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC2.56□□□□□ -2
USF1P22415 AC109583.1-201ENST00000432156 268 ntBASIC2.56□□□□□ -2
USF1P22415 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.56□□□□□ -2
USF1P22415 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC2.56□□□□□ -2
USF1P22415 OR6K1P-201ENST00000456766 971 ntBASIC2.56□□□□□ -2
USF1P22415 RPL21P39-201ENST00000463605 483 ntBASIC2.56□□□□□ -2
USF1P22415 AC011979.1-201ENST00000472300 483 ntBASIC2.56□□□□□ -2
USF1P22415 RPL21P93-201ENST00000480465 489 ntBASIC2.56□□□□□ -2
USF1P22415 AC233702.1-201ENST00000482905 502 ntBASIC2.56□□□□□ -2
USF1P22415 AC087190.1-201ENST00000484462 480 ntBASIC2.56□□□□□ -2
USF1P22415 AC093591.1-201ENST00000491435 481 ntBASIC2.56□□□□□ -2
USF1P22415 RPL21P16-201ENST00000495531 483 ntBASIC2.56□□□□□ -2
USF1P22415 AC010460.2-201ENST00000509054 677 ntBASIC2.56□□□□□ -2
USF1P22415 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
USF1P22415 FAM60DP-201ENST00000524174 632 ntBASIC2.56□□□□□ -2
USF1P22415 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC2.56□□□□□ -2
USF1P22415 AP001189.2-201ENST00000527320 189 ntBASIC2.56□□□□□ -2
USF1P22415 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.56□□□□□ -2
USF1P22415 MTND4LP25-201ENST00000570218 163 ntBASIC2.56□□□□□ -2
USF1P22415 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC2.56□□□□□ -2
USF1P22415 ELOCP29-201ENST00000588193 334 ntBASIC2.56□□□□□ -2
USF1P22415 AC100793.4-201ENST00000613683 429 ntBASIC2.56□□□□□ -2
USF1P22415 AL138880.2-201ENST00000616214 239 ntBASIC2.56□□□□□ -2
USF1P22415 AC091046.2-201ENST00000620775 665 ntBASIC2.56□□□□□ -2
USF1P22415 AP000943.4-201ENST00000622912 357 ntBASIC2.56□□□□□ -2
USF1P22415 AL136520.1-201ENST00000600311 1322 ntBASIC2.56□□□□□ -2
USF1P22415 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.56□□□□□ -2
USF1P22415 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
USF1P22415 MTND5P24-201ENST00000438892 1767 ntBASIC2.56□□□□□ -2
USF1P22415 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.55□□□□□ -2
USF1P22415 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.55□□□□□ -2
USF1P22415 SNORA63.3-201ENST00000362682 132 ntBASIC2.55□□□□□ -2
USF1P22415 U3.6-201ENST00000363622 211 ntBASIC2.55□□□□□ -2
USF1P22415 SNORA54-201ENST00000384281 123 ntBASIC2.55□□□□□ -2
USF1P22415 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.55□□□□□ -2
USF1P22415 LUZP4P1-201ENST00000415420 344 ntBASIC2.55□□□□□ -2
USF1P22415 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.55□□□□□ -2
USF1P22415 AL139281.1-201ENST00000422120 335 ntBASIC2.55□□□□□ -2
USF1P22415 TMEM167AP1-201ENST00000423409 219 ntBASIC2.55□□□□□ -2
USF1P22415 DPRXP1-201ENST00000426312 460 ntBASIC2.55□□□□□ -2
USF1P22415 EZH2P1-201ENST00000431167 291 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms