Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC2.96□□□□□ -1.94
SDC1P18827 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.96□□□□□ -1.94
SDC1P18827 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.96□□□□□ -1.94
SDC1P18827 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.96□□□□□ -1.94
SDC1P18827 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.96□□□□□ -1.94
SDC1P18827 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.96□□□□□ -1.94
SDC1P18827 SYF2P1-201ENST00000550658 413 ntBASIC2.96□□□□□ -1.94
SDC1P18827 OR4T1P-201ENST00000554933 911 ntBASIC2.96□□□□□ -1.94
SDC1P18827 DUXAP1-201ENST00000556632 463 ntBASIC2.96□□□□□ -1.94
SDC1P18827 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC2.96□□□□□ -1.94
SDC1P18827 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.96□□□□□ -1.94
SDC1P18827 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.96□□□□□ -1.94
SDC1P18827 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.96□□□□□ -1.94
SDC1P18827 AC004853.1-201ENST00000604902 698 ntBASIC2.96□□□□□ -1.94
SDC1P18827 AL133507.1-201ENST00000605269 557 ntBASIC2.96□□□□□ -1.94
SDC1P18827 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.96□□□□□ -1.94
SDC1P18827 AL596245.1-201ENST00000618994 362 ntBASIC2.96□□□□□ -1.94
SDC1P18827 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC2.96□□□□□ -1.94
SDC1P18827 AL590240.3-201ENST00000621416 943 ntBASIC2.96□□□□□ -1.94
SDC1P18827 AL445264.1-201ENST00000621719 171 ntBASIC2.96□□□□□ -1.94
SDC1P18827 PLCE1P1-201ENST00000622094 305 ntBASIC2.96□□□□□ -1.94
SDC1P18827 U6.105-201ENST00000637379 88 ntBASIC2.96□□□□□ -1.94
SDC1P18827 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.96□□□□□ -1.94
SDC1P18827 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
SDC1P18827 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.95□□□□□ -1.94
SDC1P18827 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
SDC1P18827 MTCO1P12-201ENST00000414273 1543 ntBASIC2.95□□□□□ -1.94
SDC1P18827 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.95□□□□□ -1.94
SDC1P18827 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
SDC1P18827 OR5H2-201ENST00000355273 945 ntBASIC2.95□□□□□ -1.94
SDC1P18827 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
SDC1P18827 Y_RNA.548-201ENST00000384656 105 ntBASIC2.95□□□□□ -1.94
SDC1P18827 MIR183-201ENST00000384958 110 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AL356131.1-201ENST00000405826 414 ntBASIC2.95□□□□□ -1.94
SDC1P18827 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.95□□□□□ -1.94
SDC1P18827 ZYG11AP1-201ENST00000430329 837 ntBASIC2.95□□□□□ -1.94
SDC1P18827 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC2.95□□□□□ -1.94
SDC1P18827 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC2.95□□□□□ -1.94
SDC1P18827 SDCBPP1-201ENST00000440192 890 ntBASIC2.95□□□□□ -1.94
SDC1P18827 RPL21P133-201ENST00000443666 476 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC2.95□□□□□ -1.94
SDC1P18827 RN7SL863P-201ENST00000462370 296 ntBASIC2.95□□□□□ -1.94
SDC1P18827 RPL21P104-201ENST00000464143 478 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.95□□□□□ -1.94
SDC1P18827 RN7SL20P-201ENST00000488827 297 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.95□□□□□ -1.94
SDC1P18827 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC2.95□□□□□ -1.94
SDC1P18827 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC2.95□□□□□ -1.94
SDC1P18827 RNU5A-4P-201ENST00000516588 111 ntBASIC2.95□□□□□ -1.94
SDC1P18827 MRPS36P3-201ENST00000519284 130 ntBASIC2.95□□□□□ -1.94
SDC1P18827 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
SDC1P18827 AC023050.2-201ENST00000544968 387 ntBASIC2.95□□□□□ -1.94
SDC1P18827 CR383656.7-201ENST00000548164 174 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.95□□□□□ -1.94
SDC1P18827 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.95□□□□□ -1.94
SDC1P18827 AC087465.1-201ENST00000560574 245 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC2.95□□□□□ -1.94
SDC1P18827 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.95□□□□□ -1.94
SDC1P18827 MIR3158-1-201ENST00000583596 81 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.95□□□□□ -1.94
SDC1P18827 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.95□□□□□ -1.94
SDC1P18827 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC2.95□□□□□ -1.94
SDC1P18827 AC011468.4-201ENST00000603942 409 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AL592221.1-201ENST00000605266 382 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AC112220.3-201ENST00000605502 502 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AL139418.1-201ENST00000613613 177 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AC138932.5-201ENST00000617759 563 ntBASIC2.95□□□□□ -1.94
SDC1P18827 AC034229.5-201ENST00000624258 185 ntBASIC2.95□□□□□ -1.94
SDC1P18827 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.95□□□□□ -1.94
SDC1P18827 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
SDC1P18827 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
SDC1P18827 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
SDC1P18827 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
SDC1P18827 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SDC1P18827 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
SDC1P18827 RNU6-28P-201ENST00000362378 107 ntBASIC2.94□□□□□ -1.94
SDC1P18827 RNU4-28P-201ENST00000364739 141 ntBASIC2.94□□□□□ -1.94
SDC1P18827 SNORA7.4-201ENST00000384249 137 ntBASIC2.94□□□□□ -1.94
SDC1P18827 MIR591-201ENST00000385290 95 ntBASIC2.94□□□□□ -1.94
SDC1P18827 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SDC1P18827 AL356967.1-201ENST00000406305 431 ntBASIC2.94□□□□□ -1.94
SDC1P18827 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.94□□□□□ -1.94
SDC1P18827 SNX10-203ENST00000409367 746 ntTSL 5 BASIC2.94□□□□□ -1.94
SDC1P18827 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC1P18827 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC1P18827 OFD1P11Y-201ENST00000418213 1177 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AC012498.1-201ENST00000424037 437 ntBASIC2.94□□□□□ -1.94
SDC1P18827 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.94□□□□□ -1.94
SDC1P18827 AC005300.1-201ENST00000428401 373 ntBASIC2.94□□□□□ -1.94
SDC1P18827 MTND5P14-201ENST00000441481 1267 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.94□□□□□ -1.94
SDC1P18827 CDC27P1-201ENST00000445384 715 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AC002381.1-201ENST00000447049 280 ntBASIC2.94□□□□□ -1.94
SDC1P18827 MEMO1P3-201ENST00000459811 302 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AC091153.1-201ENST00000466297 402 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AC109925.1-201ENST00000478069 331 ntBASIC2.94□□□□□ -1.94
SDC1P18827 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SDC1P18827 AC034244.1-201ENST00000507687 207 ntBASIC2.94□□□□□ -1.94
SDC1P18827 KLHL2P1-201ENST00000508691 521 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 173.1 ms