Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC4.41□□□□□ -1.7
COL3A1P02461 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL3A1P02461 AC005002.1-201ENST00000447458 540 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL3A1P02461 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.41□□□□□ -1.7
COL3A1P02461 AC006445.1-201ENST00000491925 405 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 AC069439.1-201ENST00000494739 167 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 MTCYBP18-201ENST00000501056 747 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.41□□□□□ -1.7
COL3A1P02461 AC104108.1-201ENST00000509930 412 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 RPL23AP94-201ENST00000512518 302 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC4.41□□□□□ -1.7
COL3A1P02461 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC4.41□□□□□ -1.7
COL3A1P02461 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.41□□□□□ -1.7
COL3A1P02461 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.41□□□□□ -1.7
COL3A1P02461 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.41□□□□□ -1.7
COL3A1P02461 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.41□□□□□ -1.7
COL3A1P02461 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC4.41□□□□□ -1.7
COL3A1P02461 MIR4513-201ENST00000581077 86 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC4.41□□□□□ -1.7
COL3A1P02461 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.41□□□□□ -1.7
COL3A1P02461 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.41□□□□□ -1.7
COL3A1P02461 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.41□□□□□ -1.7
COL3A1P02461 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
COL3A1P02461 AL158196.1-201ENST00000616786 434 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 VPS8-228ENST00000628962 207 ntTSL 5 BASIC4.41□□□□□ -1.7
COL3A1P02461 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.4□□□□□ -1.7
COL3A1P02461 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
COL3A1P02461 PABPC1P9-201ENST00000426076 1612 ntBASIC4.4□□□□□ -1.7
COL3A1P02461 RNA5SP374-201ENST00000362939 125 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 RNY4P14-201ENST00000363656 96 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 Y_RNA.162-201ENST00000363683 102 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
COL3A1P02461 PIGPP2-201ENST00000411569 458 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC4.4□□□□□ -1.71
COL3A1P02461 RPL30P2-201ENST00000414021 291 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 AF228730.4-201ENST00000421457 183 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 AL512649.1-201ENST00000428997 581 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 AL158071.1-201ENST00000430315 461 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.4□□□□□ -1.71
COL3A1P02461 AC093019.1-201ENST00000443135 252 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC4.4□□□□□ -1.71
COL3A1P02461 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.4□□□□□ -1.71
COL3A1P02461 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.4□□□□□ -1.71
COL3A1P02461 DPPA3P1-201ENST00000448050 469 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC4.4□□□□□ -1.71
COL3A1P02461 RPS20P24-201ENST00000457473 361 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 SNORD42A-201ENST00000459584 64 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.4□□□□□ -1.71
COL3A1P02461 PTGES3P3-201ENST00000511479 482 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 LRRC34P2-201ENST00000514850 553 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 RNU6-358P-201ENST00000516564 75 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 Y_RNA.701-201ENST00000516812 110 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.4□□□□□ -1.71
COL3A1P02461 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.4□□□□□ -1.71
COL3A1P02461 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC4.4□□□□□ -1.71
COL3A1P02461 AL391840.1-201ENST00000571144 367 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.4□□□□□ -1.71
COL3A1P02461 AC008752.3-201ENST00000588113 712 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 MIR8057-201ENST00000620957 69 ntBASIC4.4□□□□□ -1.71
COL3A1P02461 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC4.4□□□□□ -1.71
COL3A1P02461 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL3A1P02461 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL3A1P02461 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL3A1P02461 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
COL3A1P02461 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.39□□□□□ -1.71
COL3A1P02461 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL3A1P02461 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL3A1P02461 SNORA63-201ENST00000363450 132 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 RNU6-501P-201ENST00000364072 100 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 Y_RNA.302-201ENST00000364997 102 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 RNU6-1279P-201ENST00000383917 103 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 Y_RNA.402-201ENST00000383972 102 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 RNU4-31P-201ENST00000384211 141 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 AC104297.1-201ENST00000393779 870 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 CYCSP45-201ENST00000402289 315 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 CCNG1P1-201ENST00000406783 885 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 MIR1289-1-201ENST00000408836 144 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.39□□□□□ -1.71
COL3A1P02461 HMGN1P24-201ENST00000412282 298 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 AC126124.2-201ENST00000413542 321 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 BX842559.1-201ENST00000419615 532 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC4.39□□□□□ -1.71
COL3A1P02461 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4.39□□□□□ -1.71
COL3A1P02461 TIMM9P3-201ENST00000428659 274 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.39□□□□□ -1.71
COL3A1P02461 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.39□□□□□ -1.71
COL3A1P02461 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4.39□□□□□ -1.71
COL3A1P02461 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC4.39□□□□□ -1.71
COL3A1P02461 RPL7P31-201ENST00000450192 724 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.39□□□□□ -1.71
COL3A1P02461 AC013267.1-201ENST00000458227 267 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 AC109925.1-201ENST00000478069 331 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 AL049873.1-201ENST00000480540 376 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 AC107934.2-201ENST00000518653 310 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 AC087808.1-201ENST00000520501 361 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.39□□□□□ -1.71
COL3A1P02461 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.39□□□□□ -1.71
COL3A1P02461 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC4.39□□□□□ -1.71
COL3A1P02461 NIFKP8-201ENST00000560500 874 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 139.2 ms