Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC090897.3-201ENST00000636973 1157 ntBASIC3.17□□□□□ -1.9
SDC3O75056 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SDC3O75056 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.16□□□□□ -1.9
SDC3O75056 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.16□□□□□ -1.9
SDC3O75056 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SDC3O75056 RNU1-75P-201ENST00000347264 129 ntBASIC3.16□□□□□ -1.9
SDC3O75056 RNU6-173P-201ENST00000364215 104 ntBASIC3.16□□□□□ -1.9
SDC3O75056 HMGB1P17-201ENST00000403495 628 ntBASIC3.16□□□□□ -1.9
SDC3O75056 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
SDC3O75056 RNA5SP293-201ENST00000410527 113 ntBASIC3.16□□□□□ -1.9
SDC3O75056 BX890604.2-201ENST00000427883 474 ntBASIC3.16□□□□□ -1.9
SDC3O75056 AL158071.1-201ENST00000430315 461 ntBASIC3.16□□□□□ -1.9
SDC3O75056 MTND2P5-201ENST00000432656 1006 ntBASIC3.16□□□□□ -1.9
SDC3O75056 MTCYBP34-201ENST00000439552 670 ntBASIC3.16□□□□□ -1.9
SDC3O75056 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.16□□□□□ -1.9
SDC3O75056 ARPC3P2-201ENST00000457786 533 ntBASIC3.16□□□□□ -1.9
SDC3O75056 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.16□□□□□ -1.9
SDC3O75056 UBE2DNL-203ENST00000474922 222 ntBASIC3.16□□□□□ -1.9
SDC3O75056 AC079395.1-201ENST00000510981 262 ntBASIC3.16□□□□□ -1.9
SDC3O75056 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.16□□□□□ -1.9
SDC3O75056 RPL23AP94-201ENST00000512518 302 ntBASIC3.16□□□□□ -1.9
SDC3O75056 AC022690.1-201ENST00000526681 550 ntBASIC3.16□□□□□ -1.9
SDC3O75056 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.16□□□□□ -1.9
SDC3O75056 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.16□□□□□ -1.9
SDC3O75056 OR4K7P-201ENST00000580232 945 ntBASIC3.16□□□□□ -1.9
SDC3O75056 UBL5P2-201ENST00000583788 219 ntBASIC3.16□□□□□ -1.9
SDC3O75056 AC106900.2-201ENST00000604994 317 ntBASIC3.16□□□□□ -1.9
SDC3O75056 AC008962.1-201ENST00000605729 304 ntBASIC3.16□□□□□ -1.9
SDC3O75056 AC080013.4-201ENST00000607624 649 ntBASIC3.16□□□□□ -1.9
SDC3O75056 uc_338.1-201ENST00000612113 180 ntBASIC3.16□□□□□ -1.9
SDC3O75056 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.16□□□□□ -1.9
SDC3O75056 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
SDC3O75056 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SDC3O75056 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.16□□□□□ -1.9
SDC3O75056 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
SDC3O75056 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SDC3O75056 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.16□□□□□ -1.9
SDC3O75056 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.15□□□□□ -1.9
SDC3O75056 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.15□□□□□ -1.9
SDC3O75056 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.15□□□□□ -1.9
SDC3O75056 AL079305.1-201ENST00000623159 3008 ntBASIC3.15□□□□□ -1.9
SDC3O75056 AC058791.1-201ENST00000608412 3198 ntBASIC3.15□□□□□ -1.9
SDC3O75056 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC3O75056 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
SDC3O75056 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
SDC3O75056 SNORA72.3-201ENST00000365074 132 ntBASIC3.15□□□□□ -1.91
SDC3O75056 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
SDC3O75056 AP002088.1-201ENST00000382740 395 ntBASIC3.15□□□□□ -1.91
SDC3O75056 RNU6-1122P-201ENST00000384449 107 ntBASIC3.15□□□□□ -1.91
SDC3O75056 SNORA44-201ENST00000384584 132 ntBASIC3.15□□□□□ -1.91
SDC3O75056 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.15□□□□□ -1.91
SDC3O75056 HMGB3P23-201ENST00000414981 585 ntBASIC3.15□□□□□ -1.91
SDC3O75056 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC3O75056 UBE2D3P2-201ENST00000424409 445 ntBASIC3.15□□□□□ -1.91
SDC3O75056 RPL35AP12-201ENST00000425362 338 ntBASIC3.15□□□□□ -1.91
SDC3O75056 MTCO1P39-201ENST00000426148 480 ntBASIC3.15□□□□□ -1.91
SDC3O75056 AC236972.1-201ENST00000433225 199 ntBASIC3.15□□□□□ -1.91
SDC3O75056 BX679664.1-201ENST00000434429 253 ntBASIC3.15□□□□□ -1.91
SDC3O75056 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC3O75056 AC125238.1-201ENST00000448842 249 ntBASIC3.15□□□□□ -1.91
SDC3O75056 OFD1P3Y-201ENST00000453312 783 ntBASIC3.15□□□□□ -1.91
SDC3O75056 SUMO2P2-201ENST00000456482 255 ntBASIC3.15□□□□□ -1.91
SDC3O75056 AC090453.1-201ENST00000495560 436 ntBASIC3.15□□□□□ -1.91
SDC3O75056 FCF1P3-201ENST00000496394 590 ntBASIC3.15□□□□□ -1.91
SDC3O75056 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC3O75056 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC3O75056 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC3O75056 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC3O75056 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.15□□□□□ -1.91
SDC3O75056 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC3O75056 RNU6-583P-201ENST00000516012 92 ntBASIC3.15□□□□□ -1.91
SDC3O75056 ERHP1-201ENST00000523006 310 ntBASIC3.15□□□□□ -1.91
SDC3O75056 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC3O75056 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC3O75056 AC022662.1-201ENST00000580252 331 ntBASIC3.15□□□□□ -1.91
SDC3O75056 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC3O75056 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC3O75056 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC3O75056 AC243773.3-201ENST00000613270 256 ntBASIC3.15□□□□□ -1.91
SDC3O75056 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC3O75056 AC005858.4-201ENST00000623191 700 ntBASIC3.15□□□□□ -1.91
SDC3O75056 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SDC3O75056 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SDC3O75056 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SDC3O75056 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SDC3O75056 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
SDC3O75056 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SDC3O75056 MTND5P27-201ENST00000428871 1720 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AC118273.1-201ENST00000525324 3006 ntBASIC3.14□□□□□ -1.91
SDC3O75056 SNORA80A-201ENST00000363922 136 ntBASIC3.14□□□□□ -1.91
SDC3O75056 Y_RNA.192-201ENST00000363977 102 ntBASIC3.14□□□□□ -1.91
SDC3O75056 RNU1-140P-201ENST00000365040 165 ntBASIC3.14□□□□□ -1.91
SDC3O75056 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
SDC3O75056 Y_RNA.465-201ENST00000384293 102 ntBASIC3.14□□□□□ -1.91
SDC3O75056 Y_RNA.500-201ENST00000384466 111 ntBASIC3.14□□□□□ -1.91
SDC3O75056 RNU6-636P-201ENST00000384598 107 ntBASIC3.14□□□□□ -1.91
SDC3O75056 SKINT1L-201ENST00000401057 817 ntBASIC3.14□□□□□ -1.91
SDC3O75056 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC3O75056 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.14□□□□□ -1.91
SDC3O75056 TIMM9P2-201ENST00000419324 266 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms