Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
MSH6P52701 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
MSH6P52701 FAM220CP-201ENST00000395253 831 ntBASIC26.55■■□□□ 1.84
MSH6P52701 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC26.55■■□□□ 1.84
MSH6P52701 AC074051.2-201ENST00000565115 352 ntBASIC26.55■■□□□ 1.84
MSH6P52701 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC26.55■■□□□ 1.84
MSH6P52701 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
MSH6P52701 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
MSH6P52701 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC26.55■■□□□ 1.84
MSH6P52701 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
MSH6P52701 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
MSH6P52701 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC26.54■■□□□ 1.84
MSH6P52701 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
MSH6P52701 BID-203ENST00000399765 1879 ntTSL 2 BASIC26.54■■□□□ 1.84
MSH6P52701 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
MSH6P52701 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH6P52701 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH6P52701 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC26.54■■□□□ 1.84
MSH6P52701 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC26.54■■□□□ 1.84
MSH6P52701 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC26.54■■□□□ 1.84
MSH6P52701 PPIE-208ENST00000470213 927 ntTSL 3 BASIC26.54■■□□□ 1.84
MSH6P52701 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC26.54■■□□□ 1.84
MSH6P52701 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC26.54■■□□□ 1.84
MSH6P52701 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
MSH6P52701 AL157888.1-201ENST00000631930 593 ntBASIC26.54■■□□□ 1.84
MSH6P52701 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC26.54■■□□□ 1.84
MSH6P52701 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH6P52701 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH6P52701 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC26.54■■□□□ 1.84
MSH6P52701 FEM1AP1-201ENST00000431297 1995 ntBASIC26.54■■□□□ 1.84
MSH6P52701 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH6P52701 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC26.54■■□□□ 1.84
MSH6P52701 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC26.54■■□□□ 1.84
MSH6P52701 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC26.53■■□□□ 1.84
MSH6P52701 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
MSH6P52701 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
MSH6P52701 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC26.53■■□□□ 1.84
MSH6P52701 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH6P52701 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC26.53■■□□□ 1.84
MSH6P52701 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH6P52701 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC26.53■■□□□ 1.84
MSH6P52701 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH6P52701 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC26.53■■□□□ 1.84
MSH6P52701 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH6P52701 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC26.53■■□□□ 1.84
MSH6P52701 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC26.53■■□□□ 1.84
MSH6P52701 SLC25A1P1-201ENST00000528351 927 ntBASIC26.53■■□□□ 1.84
MSH6P52701 AC092865.5-201ENST00000545435 363 ntBASIC26.53■■□□□ 1.84
MSH6P52701 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC26.53■■□□□ 1.84
MSH6P52701 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH6P52701 AC007225.1-201ENST00000566331 1836 ntBASIC26.53■■□□□ 1.84
MSH6P52701 AL391807.1-203ENST00000604392 2365 ntBASIC26.53■■□□□ 1.84
MSH6P52701 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH6P52701 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC26.53■■□□□ 1.84
MSH6P52701 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
MSH6P52701 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH6P52701 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
MSH6P52701 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH6P52701 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH6P52701 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
MSH6P52701 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC26.52■■□□□ 1.84
MSH6P52701 RNA5SP419-201ENST00000515908 135 ntBASIC26.52■■□□□ 1.84
MSH6P52701 AP001005.1-201ENST00000571755 1248 ntBASIC26.52■■□□□ 1.84
MSH6P52701 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
MSH6P52701 GPAT2P1-201ENST00000444924 1672 ntBASIC26.52■■□□□ 1.84
MSH6P52701 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC26.52■■□□□ 1.84
MSH6P52701 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
MSH6P52701 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC26.51■■□□□ 1.84
MSH6P52701 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
MSH6P52701 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC26.51■■□□□ 1.83
MSH6P52701 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
MSH6P52701 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH6P52701 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH6P52701 BAALC-202ENST00000306391 243 ntTSL 5 BASIC26.51■■□□□ 1.83
MSH6P52701 BAALC-204ENST00000330955 222 ntTSL 5 BASIC26.51■■□□□ 1.83
MSH6P52701 SAPCD2P3-201ENST00000455031 850 ntBASIC26.51■■□□□ 1.83
MSH6P52701 TK1-205ENST00000590862 642 ntTSL 3 BASIC26.51■■□□□ 1.83
MSH6P52701 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH6P52701 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.83
MSH6P52701 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH6P52701 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH6P52701 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
MSH6P52701 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC26.5■■□□□ 1.83
MSH6P52701 AC026310.3-201ENST00000625186 2373 ntBASIC26.5■■□□□ 1.83
MSH6P52701 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
MSH6P52701 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
MSH6P52701 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC26.5■■□□□ 1.83
MSH6P52701 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
MSH6P52701 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC26.5■■□□□ 1.83
MSH6P52701 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC26.5■■□□□ 1.83
MSH6P52701 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC26.5■■□□□ 1.83
MSH6P52701 KRT18P58-201ENST00000527480 1120 ntBASIC26.5■■□□□ 1.83
MSH6P52701 ABR-204ENST00000543210 1049 ntTSL 2 BASIC26.5■■□□□ 1.83
MSH6P52701 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC26.5■■□□□ 1.83
MSH6P52701 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC26.5■■□□□ 1.83
MSH6P52701 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC26.5■■□□□ 1.83
MSH6P52701 LINC00167-201ENST00000530583 1419 ntBASIC26.5■■□□□ 1.83
MSH6P52701 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
MSH6P52701 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
MSH6P52701 AC006128.1-201ENST00000624704 1661 ntBASIC26.5■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms