Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AC090517.2-201ENST00000614966 680 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AC073534.2-201ENST00000620377 381 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC009902.3-201ENST00000606235 2172 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC008033.1-201ENST00000216407 1162 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 GNG5P1-201ENST00000255500 204 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 RNU6-989P-201ENST00000362756 107 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 RNU4-1-201ENST00000363925 141 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 SNORD46.1-201ENST00000364139 104 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 RNVU1-3-201ENST00000364313 161 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 Y_RNA.333-201ENST00000365274 102 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 U3.15-201ENST00000365398 212 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 RNU6-1103P-201ENST00000384150 107 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 MIR181A1-201ENST00000385026 110 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AL583835.1-201ENST00000399570 407 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AL138878.1-201ENST00000405131 347 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 FCF1P10-201ENST00000407590 479 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 CYCSP19-201ENST00000411715 316 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 MTND1P21-201ENST00000412991 285 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC009237.5-201ENST00000414271 501 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 SPA17P1-201ENST00000416656 452 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 ISCA1P1-201ENST00000426679 387 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AL117339.2-201ENST00000430475 180 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 ELOCP18-201ENST00000434209 337 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC007389.2-201ENST00000434630 306 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 RPL22P17-201ENST00000438729 315 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 RN7SL585P-201ENST00000470538 280 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC021382.1-201ENST00000483523 359 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC104164.2-201ENST00000496953 495 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 IGKV2D-23-201ENST00000518179 286 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC006064.5-201ENST00000541782 248 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC123904.2-201ENST00000548059 300 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 CCNG2P1-201ENST00000549521 1000 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 CBX3P5-201ENST00000552017 521 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 SETP7-201ENST00000552169 453 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC124947.2-202ENST00000552735 133 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 SETP2-201ENST00000553886 926 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 CENPUP2-201ENST00000555897 1186 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 TVP23BP1-201ENST00000557500 617 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 MIR3118-1-201ENST00000581787 76 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 DUXAP4-201ENST00000603046 613 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC011468.4-201ENST00000603942 409 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC113403.1-201ENST00000604910 193 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 OR10AB1P-201ENST00000609613 938 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 BX664608.1-201ENST00000610519 487 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 MIR8059-201ENST00000620427 81 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 MIR7702-201ENST00000621931 59 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC124864.2-201ENST00000624736 186 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC112200.1-201ENST00000625015 234 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 OR5H6-203ENST00000642105 978 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 MARK2P15-201ENST00000432204 2186 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 AC010733.2-201ENST00000589496 5702 ntBASIC4.06□□□□□ -1.76
VPS4AQ9UN37 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS4AQ9UN37 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC092125.1-201ENST00000562568 1995 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 MIR372-201ENST00000362225 67 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms