Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.26□□□□□ -1.89
NDE1Q9NXR1 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.26□□□□□ -1.89
NDE1Q9NXR1 MTCYBP22-201ENST00000603788 447 ntBASIC3.26□□□□□ -1.89
NDE1Q9NXR1 AC107214.2-201ENST00000608204 634 ntBASIC3.26□□□□□ -1.89
NDE1Q9NXR1 AC103710.4-201ENST00000609301 899 ntBASIC3.26□□□□□ -1.89
NDE1Q9NXR1 AC090116.1-201ENST00000615679 446 ntBASIC3.26□□□□□ -1.89
NDE1Q9NXR1 AC009090.3-201ENST00000616553 565 ntBASIC3.26□□□□□ -1.89
NDE1Q9NXR1 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NDE1Q9NXR1 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.26□□□□□ -1.89
NDE1Q9NXR1 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.26□□□□□ -1.89
NDE1Q9NXR1 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
NDE1Q9NXR1 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NDE1Q9NXR1 MAPK10-362ENST00000641864 4484 ntBASIC3.26□□□□□ -1.89
NDE1Q9NXR1 AL022578.1-201ENST00000439330 1433 ntBASIC3.26□□□□□ -1.89
NDE1Q9NXR1 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
NDE1Q9NXR1 AC093831.2-201ENST00000624393 3427 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 SNORD116-9-201ENST00000384000 95 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 SNORD116-3-201ENST00000384287 95 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 SNORD116-7-201ENST00000384404 95 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 SNORD116-5-201ENST00000384462 95 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 MIR23B-201ENST00000384832 97 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 SNORA57.1-201ENST00000391227 145 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 SNORA48.7-201ENST00000391302 135 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AL445189.1-201ENST00000405722 338 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 BMS1P22-201ENST00000414726 313 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 PSMA2P3-201ENST00000429685 675 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 VN1R108P-201ENST00000431580 830 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 CST9LP2-201ENST00000437612 320 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 MTND4P6-201ENST00000438297 472 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AP000936.2-201ENST00000447151 681 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 NUTF2P7-201ENST00000453086 375 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 RPS4XP13-201ENST00000483219 789 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 RPL31P13-201ENST00000484151 370 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC093663.1-201ENST00000497190 394 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC114981.1-201ENST00000503897 678 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 MTND4LP22-201ENST00000508209 276 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 MTCO3P44-201ENST00000510977 541 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 MTND5P13-201ENST00000513046 1079 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 RNA5SP385-201ENST00000515947 110 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 RN7SKP21-201ENST00000516503 220 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 RNU4-60P-201ENST00000517239 135 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AL163153.1-201ENST00000554223 283 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 MIR4506-201ENST00000584693 77 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AP001981.2-201ENST00000603241 418 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC007566.2-201ENST00000603642 413 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC064807.4-201ENST00000607201 407 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC135507.1-201ENST00000607214 561 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AL159169.3-201ENST00000608871 561 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC106028.5-201ENST00000610332 395 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 MIR6716-201ENST00000613413 80 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC025588.4-201ENST00000615802 908 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AC093908.1-201ENST00000623125 8092 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 AL359893.1-201ENST00000447628 1580 ntBASIC3.25□□□□□ -1.89
NDE1Q9NXR1 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.25□□□□□ -1.89
NDE1Q9NXR1 CR383658.2-201ENST00000547576 1525 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
NDE1Q9NXR1 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
NDE1Q9NXR1 SNORA51.4-201ENST00000364993 124 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 Y_RNA.318-201ENST00000365131 97 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
NDE1Q9NXR1 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.24□□□□□ -1.89
NDE1Q9NXR1 RNU6-356P-201ENST00000384140 107 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 RNU6-952P-201ENST00000391164 108 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 RNA5SP44-201ENST00000410446 133 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 RPL31P2-201ENST00000413849 377 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 SEPT2P1-201ENST00000419651 180 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.24□□□□□ -1.89
NDE1Q9NXR1 RPL7P46-201ENST00000425129 740 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.24□□□□□ -1.89
NDE1Q9NXR1 OR2B8P-201ENST00000432841 938 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.24□□□□□ -1.89
NDE1Q9NXR1 AC129850.1-201ENST00000436203 508 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 MTCO2P16-201ENST00000436962 677 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 HIGD1AP11-201ENST00000438361 280 ntBASIC3.24□□□□□ -1.89
NDE1Q9NXR1 LSM1P1-201ENST00000438629 273 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms