Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MEPE-206ENST00000511670 550 ntTSL 4 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 MTCO1P35-201ENST00000515270 228 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 SNORA70.16-201ENST00000516390 95 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 NARSP2-201ENST00000518524 679 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AC090151.1-201ENST00000520784 730 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 PSMA3P-201ENST00000555485 635 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AC037471.2-201ENST00000564941 598 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AC005261.5-201ENST00000596280 355 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 SNORD91B-202ENST00000608459 222 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AC009570.1-201ENST00000609599 745 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 U2.17-201ENST00000611454 95 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 LINC00901.1-201ENST00000617252 152 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AL136221.1-201ENST00000621449 509 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 RN7SKP153-201ENST00000365026 316 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 PARD3-204ENST00000374768 799 ntTSL 3 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 RNU6-434P-201ENST00000384376 107 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AL139039.1-201ENST00000401900 692 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AL772161.1-201ENST00000439130 476 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 RPS29P10-201ENST00000439197 166 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 CYCSP24-201ENST00000445119 316 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 RPS20P22-201ENST00000473700 357 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AL160314.1-201ENST00000490836 438 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 RNU6-1038P-201ENST00000516516 104 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 RN7SKP260-201ENST00000516907 149 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 RN7SKP256-201ENST00000517201 314 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AP000763.2-201ENST00000540641 163 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 MIR5692A1-201ENST00000580523 69 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 MIR4436B2-201ENST00000581415 91 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AC053481.4-201ENST00000583164 216 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 MIR4436B1-201ENST00000583272 91 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AC106900.2-201ENST00000604994 317 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 AC091905.4-201ENST00000623432 202 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 MTND4P35-201ENST00000604257 1375 ntBASIC5.66□□□□□ -1.5
TRAIPQ9BWF2 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 RNA5SP52-201ENST00000362448 134 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 RNU6-1167P-201ENST00000363227 94 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 RNA5SP123-201ENST00000363244 119 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 Y_RNA.263-201ENST00000364659 114 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 RNU6-1013P-201ENST00000384180 107 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 RNU6-393P-201ENST00000384475 107 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 Y_RNA.530-201ENST00000384587 101 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AL590704.1-201ENST00000402856 794 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 PPIAP31-201ENST00000405422 495 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 RN7SKP100-201ENST00000411258 284 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 CYP4F29P-201ENST00000420685 446 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AL160275.3-201ENST00000423876 471 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 MTND4LP16-201ENST00000440828 295 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 139.6 ms