Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC093151.1-201ENST00000427711 313 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 ELOCP26-201ENST00000436067 329 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 YWHAZP7-201ENST00000436906 631 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 HIGD1AP11-201ENST00000438361 280 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 RPL17P49-201ENST00000443728 411 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 AP001992.1-205ENST00000462248 379 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 RPS26P21-201ENST00000475397 348 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 RPS3AP43-201ENST00000479743 781 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 RN7SL504P-201ENST00000494496 287 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC093278.1-201ENST00000494700 600 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 CBX3P3-201ENST00000508108 532 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 RN7SKP282-201ENST00000516824 299 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 HSPA8P13-201ENST00000523715 472 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC022690.1-201ENST00000526681 550 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS35Q96QK1 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC005832.3-201ENST00000537929 631 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC012493.2-201ENST00000595083 291 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AL031176.1-201ENST00000604554 466 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC106900.2-201ENST00000604994 317 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC012443.1-201ENST00000605605 231 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 AL138478.1-201ENST00000612252 832 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC100793.4-201ENST00000613683 429 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC068831.7-201ENST00000616954 363 ntBASIC3.12□□□□□ -1.91
VPS35Q96QK1 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS35Q96QK1 AC097714.1-201ENST00000511272 1647 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS35Q96QK1 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VPS35Q96QK1 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 U3.11-201ENST00000364476 212 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 RNU6-882P-201ENST00000391025 103 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AL136372.1-201ENST00000403060 228 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AL590084.1-201ENST00000407885 387 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AC007899.1-201ENST00000412776 775 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 MTATP6P27-201ENST00000416987 621 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 AL512649.1-201ENST00000428997 581 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 TRIM60P18-201ENST00000441518 828 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 RPL23AP76-201ENST00000441860 458 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AC104308.1-201ENST00000454621 333 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 RPL21P131-201ENST00000497298 483 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 MTCYBP17-201ENST00000503579 789 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 PRELID3BP6-201ENST00000503839 571 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AC114981.1-201ENST00000503897 678 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 RNA5SP217-201ENST00000515959 91 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 RNU1-143P-201ENST00000516296 146 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AC007536.1-201ENST00000533382 349 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 AL132657.2-201ENST00000564417 358 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 BNIP3P11-201ENST00000603878 563 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AC008962.1-201ENST00000605729 304 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AC097504.2-201ENST00000608088 454 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 U1.23-201ENST00000610293 146 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AL591516.1-201ENST00000611326 274 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 RNU1-68P-201ENST00000615382 146 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 MIR8057-201ENST00000620957 69 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 U1.39-201ENST00000621562 146 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 AC026422.1-201ENST00000623961 452 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 LINC02211-204ENST00000642024 1070 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 OR5BR1P-201ENST00000524992 1330 ntBASIC3.11□□□□□ -1.91
VPS35Q96QK1 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS35Q96QK1 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 MIR620-201ENST00000385232 95 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 SSXP9-201ENST00000417503 292 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC233728.2-201ENST00000425348 757 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC244505.4-201ENST00000434905 287 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 SSXP5-201ENST00000443473 287 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 RAC1P7-201ENST00000445367 377 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 RPL36AP33-201ENST00000450395 310 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 FCF1P6-201ENST00000456841 595 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 MTND3P3-201ENST00000505004 126 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms