Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 HMGB1P31-201ENST00000437242 427 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 FTH1P1-201ENST00000437933 532 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AC079781.2-201ENST00000446424 169 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 PPIAP3-201ENST00000450588 505 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AC234775.1-201ENST00000454247 670 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AL049714.1-201ENST00000466686 347 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 HMGB1P25-201ENST00000468402 607 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AC083829.1-201ENST00000503756 657 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 TMEM248P1-201ENST00000510579 951 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 PPBPP1-201ENST00000510807 373 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 FTH1P21-201ENST00000512179 511 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 RNU6-1281P-201ENST00000516223 105 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 MIR3138-201ENST00000585238 82 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AC008752.3-201ENST00000588113 712 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 NRBF2P5-201ENST00000603087 788 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AL162413.1-201ENST00000603198 110 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AL590392.1-201ENST00000604960 446 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 Z84480.1-201ENST00000605131 311 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AC008536.2-201ENST00000607284 349 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AC114781.5-201ENST00000615297 108 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AL356585.4-201ENST00000623078 1229 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AC005609.4-201ENST00000625071 447 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AC055839.1-201ENST00000634467 498 ntBASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
CTHRC1Q96CG8 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.96□□□□□ -1.77
CTHRC1Q96CG8 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 OR1S2-201ENST00000302592 978 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 RNA5SP502-201ENST00000362694 119 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 Y_RNA.159-201ENST00000363674 87 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 Y_RNA.390-201ENST00000383932 102 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 RNU6-837P-201ENST00000391056 108 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 MIR1179-201ENST00000408703 91 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 RNA5SP36-201ENST00000410197 133 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC011933.1-201ENST00000413334 321 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 ZNF90P2-204ENST00000419323 1075 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 RPL7P54-201ENST00000438336 674 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 TPT1P14-201ENST00000448018 505 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 DPPA3P1-201ENST00000448050 469 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC116533.1-201ENST00000459748 321 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC041039.1-201ENST00000485656 536 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC021146.1-201ENST00000511202 716 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 RNU6-798P-201ENST00000516912 103 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 OR4R1P-201ENST00000529879 463 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AP000857.1-201ENST00000532151 543 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 RPL21P12-201ENST00000559810 515 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC098848.2-201ENST00000588023 330 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 IGHV3-29-201ENST00000604817 344 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AL136363.1-201ENST00000605349 337 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 MIR432-201ENST00000606207 94 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AL158211.4-201ENST00000606988 584 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 TUG1_1.1-201ENST00000610654 145 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 MIR6830-201ENST00000636015 70 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 NMD3P1-201ENST00000439704 1488 ntBASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CTHRC1Q96CG8 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 Z73965.1-201ENST00000623412 2297 ntBASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 CR848007.1-201ENST00000442354 1699 ntBASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 RNU6-263P-201ENST00000363811 107 ntBASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 RNU6-534P-201ENST00000364877 106 ntBASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 RNU1-39P-201ENST00000383897 165 ntBASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 RPS3AP24-201ENST00000407896 734 ntBASIC3.95□□□□□ -1.78
CTHRC1Q96CG8 AMD1P2-201ENST00000412936 992 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms