Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC022893.2-201ENST00000564832 3296 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 RNU6-28P-201ENST00000362378 107 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 RNA5SP443-201ENST00000363083 132 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 RNA5SP399-201ENST00000364003 117 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 RNU6-1279P-201ENST00000383917 103 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 RNY3P14-201ENST00000384309 102 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 RPL31P1-201ENST00000398116 372 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC245052.5-201ENST00000416320 649 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC108032.1-201ENST00000416706 207 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 USP9YP36-201ENST00000424581 829 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 ISCA1P6-201ENST00000427740 390 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 TBCAP1-201ENST00000436520 327 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AL451074.3-201ENST00000437709 472 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC122718.1-201ENST00000439448 744 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 FAM133DP-201ENST00000464802 691 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 RN7SL860P-201ENST00000473738 223 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 ARL2BPP6-201ENST00000512757 439 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 HIGD1AP3-201ENST00000515857 278 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC092470.1-201ENST00000546187 132 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 CENPUP2-201ENST00000555897 1186 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC068135.2-201ENST00000569293 1028 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC023575.1-201ENST00000580510 358 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AP001596.2-201ENST00000608410 312 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 AC004009.2-201ENST00000623016 728 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP4Q8N3C7 UBE3AP2-201ENST00000429033 2259 ntBASIC3.65□□□□□ -1.82
CLIP4Q8N3C7 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
CLIP4Q8N3C7 IPO8P1-201ENST00000455509 3109 ntBASIC3.65□□□□□ -1.82
CLIP4Q8N3C7 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.65□□□□□ -1.82
CLIP4Q8N3C7 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.82
CLIP4Q8N3C7 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CLIP4Q8N3C7 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AC126755.2-208ENST00000327792 462 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AC138969.1-213ENST00000331436 462 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 Y_RNA.46-201ENST00000362695 102 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 Y_RNA.88-201ENST00000363029 99 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 RNU6-853P-201ENST00000364306 107 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 RNA5SP130-201ENST00000364431 114 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 SNORA56-201ENST00000383966 129 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AL590002.1-201ENST00000406554 418 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 RNA5SP239-201ENST00000410218 129 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 Y_RNA.625-201ENST00000411256 107 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 RPL7AP73-201ENST00000413490 353 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 MTATP6P27-201ENST00000416987 621 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AC127526.1-201ENST00000417526 366 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AL589872.1-201ENST00000426602 288 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AL035410.1-201ENST00000427409 427 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 OR51AB1P-201ENST00000429046 620 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AL590233.1-201ENST00000430017 456 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 ARPC3P1-201ENST00000437218 533 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 HMGB1P37-201ENST00000439613 609 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 MTATP6P30-201ENST00000443540 664 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 TPT1P13-201ENST00000449760 499 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 MTCO3P20-201ENST00000454926 688 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AC004801.2-202ENST00000463559 283 ntBASIC3.65□□□□□ -1.83
CLIP4Q8N3C7 AL672167.3-201ENST00000465951 960 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms