Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MTND5P3-201ENST00000438536 1800 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 SNORD9-201ENST00000362566 104 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 RNU6-283P-201ENST00000364788 107 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 RNU6-821P-201ENST00000390995 107 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 U3.39-201ENST00000408569 239 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 RAB9AP3-201ENST00000412737 573 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AL445669.1-201ENST00000426743 755 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC018644.1-201ENST00000429934 551 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC109583.1-201ENST00000432156 268 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC122718.1-201ENST00000439448 744 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 SDCBPP1-201ENST00000440192 890 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 PAXBP1P1-201ENST00000449315 447 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 RAB9AP1-201ENST00000449393 573 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 FAM133DP-201ENST00000464802 691 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 HMGB1P25-201ENST00000468402 607 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 HMGB1P36-201ENST00000487709 576 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC010625.1-201ENST00000511296 403 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC060788.1-201ENST00000521318 469 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC012414.6-201ENST00000568241 401 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 MIR4738-201ENST00000579134 87 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 MIR544B-201ENST00000582372 78 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC006116.10-201ENST00000591836 581 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC025594.3-201ENST00000613068 790 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC011939.3-201ENST00000613686 466 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC138649.5-201ENST00000637456 137 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AL161912.2-201ENST00000565707 3007 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 AC007823.1-201ENST00000569932 1566 ntBASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SYNE3Q6ZMZ3 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 PABPC1P9-201ENST00000426076 1612 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 Y_RNA.51-201ENST00000362725 102 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 RNU6-289P-201ENST00000364093 107 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 RNA5SP42-201ENST00000364278 115 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 RNVU1-3-201ENST00000364313 161 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 RNA5SP235-201ENST00000365411 114 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 RNU6-359P-201ENST00000365466 108 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 MIR134-201ENST00000385258 73 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 MT-TC-201ENST00000387405 66 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 MIR320C1-201ENST00000408566 88 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 MTCO2P16-201ENST00000436962 677 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 LSM1P1-201ENST00000438629 273 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AL831737.1-201ENST00000441288 271 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AP000542.1-201ENST00000448473 371 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AL133547.1-201ENST00000448546 220 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 HMGB3P30-201ENST00000457863 606 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 RN7SL542P-201ENST00000467147 294 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC116337.2-201ENST00000477662 156 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC092451.1-201ENST00000480211 153 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 RPS3AP50-201ENST00000487064 803 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 MTND5P13-201ENST00000513046 1079 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 MTND5P4-201ENST00000514978 288 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 RNU6-27P-201ENST00000516146 107 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 TRMT10BP1-201ENST00000519377 943 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC007115.1-201ENST00000546853 234 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC107954.1-201ENST00000565906 727 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 MIR5047-201ENST00000579212 100 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 BBIP1P1-201ENST00000602999 279 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 MIR7851-201ENST00000610611 160 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC006329.2-201ENST00000611491 394 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC034229.5-201ENST00000624258 185 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AP001148.1-201ENST00000624124 2359 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 DCAF13P1-201ENST00000495256 1330 ntBASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.18□□□□□ -1.74
SYNE3Q6ZMZ3 MTND4P4-201ENST00000439033 1366 ntBASIC4.17□□□□□ -1.74
SYNE3Q6ZMZ3 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.17□□□□□ -1.74
SYNE3Q6ZMZ3 RNU6-28P-201ENST00000362378 107 ntBASIC4.17□□□□□ -1.74
SYNE3Q6ZMZ3 RNU5F-6P-201ENST00000362979 116 ntBASIC4.17□□□□□ -1.74
SYNE3Q6ZMZ3 RNU6-744P-201ENST00000365557 107 ntBASIC4.17□□□□□ -1.74
SYNE3Q6ZMZ3 SNORA5A-201ENST00000384111 134 ntBASIC4.17□□□□□ -1.74
SYNE3Q6ZMZ3 RNU6-1316P-201ENST00000384242 108 ntBASIC4.17□□□□□ -1.74
SYNE3Q6ZMZ3 Y_RNA.493-201ENST00000384422 102 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms