Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC107954.1-201ENST00000565906 727 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 MIR5697-201ENST00000578045 78 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 BNIP3P8-201ENST00000597863 560 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 SNORA62.6-201ENST00000606322 83 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 SEPT14P19-203ENST00000633205 211 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 RNU1-18P-201ENST00000363062 164 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 RPL7P60-201ENST00000397636 735 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 MIR320C1-201ENST00000408566 88 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 MTND1P21-201ENST00000412991 285 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 RPL21P109-201ENST00000422213 475 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AL445584.1-201ENST00000431451 330 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AL022238.1-201ENST00000442557 355 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 MTND4P18-201ENST00000447010 465 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 NANOGP10-201ENST00000453325 895 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AL139099.1-201ENST00000497398 403 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AC105252.1-201ENST00000503089 286 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 RNU6-506P-201ENST00000516553 94 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AC104986.1-201ENST00000517978 436 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 HSPA8P13-201ENST00000523715 472 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AC022878.1-201ENST00000530684 149 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AC013828.2-201ENST00000532487 235 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AC008127.2-201ENST00000549925 1075 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AL133457.1-201ENST00000564251 987 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 TPRKBP2-201ENST00000565969 475 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 MIR4307-201ENST00000582802 84 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AL137849.1-201ENST00000604767 169 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 BRDTP1-201ENST00000605735 677 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 AC091834.1-201ENST00000614543 472 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 C2orf27A-204ENST00000623058 969 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 MFSD8-236ENST00000641509 4050 ntBASIC4.55□□□□□ -1.68
VPS53Q5VIR6 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS53Q5VIR6 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 RNU6-777P-201ENST00000364265 104 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 RNA5SP167-201ENST00000365461 116 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AL024474.1-201ENST00000404655 591 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 SNORA3.3-201ENST00000408712 125 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC122718.1-201ENST00000439448 744 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 GDI2P2-201ENST00000445131 608 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 HMGN2P21-201ENST00000447764 270 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 NANOGNBP1-201ENST00000448444 480 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AP000873.1-201ENST00000463987 400 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 FAM133DP-201ENST00000464802 691 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AL136126.1-201ENST00000473603 402 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC017015.1-201ENST00000477387 286 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AL358832.1-201ENST00000497800 389 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC108941.1-201ENST00000502853 530 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 OR5H5P-201ENST00000503164 928 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 TMEM251P1-201ENST00000503717 318 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 MIR2114-201ENST00000516645 80 ntBASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS53Q5VIR6 MED28P5-201ENST00000528254 438 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms