Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC004520.1-201ENST00000608362 1413 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL512283.1-201ENST00000606756 1384 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 FAM35CP-201ENST00000554755 2470 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 MIR583-201ENST00000384846 75 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 MIR320B1-201ENST00000390209 79 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC104472.2-201ENST00000469035 601 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 RPL38P4-201ENST00000502376 214 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 RPL23AP78-201ENST00000599928 470 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC092650.2-201ENST00000619984 902 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC88AQ3V6T2 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC88AQ3V6T2 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC88AQ3V6T2 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.57□□□□□ -2
CCDC88AQ3V6T2 NEK4P1-201ENST00000433383 879 ntBASIC2.57□□□□□ -2
CCDC88AQ3V6T2 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.57□□□□□ -2
CCDC88AQ3V6T2 RPL21P2-201ENST00000440049 481 ntBASIC2.57□□□□□ -2
CCDC88AQ3V6T2 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC2.57□□□□□ -2
CCDC88AQ3V6T2 AC087190.1-201ENST00000484462 480 ntBASIC2.57□□□□□ -2
CCDC88AQ3V6T2 RNU6-491P-201ENST00000516099 110 ntBASIC2.57□□□□□ -2
CCDC88AQ3V6T2 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC2.57□□□□□ -2
CCDC88AQ3V6T2 AC008083.2-201ENST00000546707 476 ntBASIC2.57□□□□□ -2
CCDC88AQ3V6T2 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.57□□□□□ -2
CCDC88AQ3V6T2 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.57□□□□□ -2
CCDC88AQ3V6T2 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC88AQ3V6T2 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.57□□□□□ -2
CCDC88AQ3V6T2 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.56□□□□□ -2
CCDC88AQ3V6T2 MIR489-201ENST00000384923 84 ntBASIC2.56□□□□□ -2
CCDC88AQ3V6T2 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.56□□□□□ -2
CCDC88AQ3V6T2 RPL21P103-201ENST00000479921 488 ntBASIC2.56□□□□□ -2
CCDC88AQ3V6T2 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC2.56□□□□□ -2
CCDC88AQ3V6T2 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.56□□□□□ -2
CCDC88AQ3V6T2 AC011611.5-201ENST00000552477 578 ntBASIC2.56□□□□□ -2
CCDC88AQ3V6T2 AC090425.2-201ENST00000608818 501 ntBASIC2.56□□□□□ -2
CCDC88AQ3V6T2 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.56□□□□□ -2
CCDC88AQ3V6T2 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.56□□□□□ -2
CCDC88AQ3V6T2 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.56□□□□□ -2
CCDC88AQ3V6T2 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.56□□□□□ -2
CCDC88AQ3V6T2 RN7SKP226-201ENST00000364912 300 ntBASIC2.56□□□□□ -2
CCDC88AQ3V6T2 USP9YP8-201ENST00000441913 500 ntBASIC2.56□□□□□ -2
CCDC88AQ3V6T2 OR7L1P-201ENST00000456181 380 ntBASIC2.56□□□□□ -2
CCDC88AQ3V6T2 HMGN1P8-201ENST00000463578 288 ntBASIC2.56□□□□□ -2
CCDC88AQ3V6T2 RPL7P5-201ENST00000471472 736 ntBASIC2.56□□□□□ -2
CCDC88AQ3V6T2 AC017007.3-201ENST00000479865 435 ntBASIC2.56□□□□□ -2
CCDC88AQ3V6T2 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.56□□□□□ -2
CCDC88AQ3V6T2 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 BTBD10P2-201ENST00000404779 676 ntBASIC2.55□□□□□ -2
CCDC88AQ3V6T2 PRELID3BP11-201ENST00000414230 479 ntBASIC2.55□□□□□ -2
CCDC88AQ3V6T2 AL445646.1-201ENST00000431784 216 ntBASIC2.55□□□□□ -2
CCDC88AQ3V6T2 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 AC012182.1-201ENST00000570133 895 ntBASIC2.55□□□□□ -2
CCDC88AQ3V6T2 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 AC016877.3-201ENST00000606778 504 ntBASIC2.55□□□□□ -2
CCDC88AQ3V6T2 MFSD8-245ENST00000641743 948 ntBASIC2.55□□□□□ -2
CCDC88AQ3V6T2 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CCDC88AQ3V6T2 AL355578.1-201ENST00000607405 1328 ntBASIC2.55□□□□□ -2
CCDC88AQ3V6T2 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC2.54□□□□□ -2
CCDC88AQ3V6T2 HNRNPDP2-201ENST00000406475 478 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.54□□□□□ -2
CCDC88AQ3V6T2 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC008173.1-201ENST00000418901 264 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC023512.1-201ENST00000444513 499 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC093392.2-201ENST00000450682 337 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AL118520.1-201ENST00000450770 291 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC021146.7-201ENST00000509604 775 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AP003385.6-201ENST00000531603 374 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 DNAJC19P9-201ENST00000555084 351 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC108479.2-201ENST00000617314 601 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
CCDC88AQ3V6T2 MIR4496-201ENST00000635896 61 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.54□□□□□ -2
CCDC88AQ3V6T2 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
CCDC88AQ3V6T2 Y_RNA.116-201ENST00000363292 103 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 ATP5F1P1-201ENST00000433775 569 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 RPL31P20-201ENST00000449593 360 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC011753.1-201ENST00000451001 220 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC027673.1-201ENST00000456245 405 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 HSPE1P18-201ENST00000517602 280 ntBASIC2.54□□□□□ -2
CCDC88AQ3V6T2 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms