Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AP003499.2-201ENST00000624100 483 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
CHD9Q3L8U1 MIR1323-201ENST00000408090 73 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 RNU6-174P-201ENST00000410406 106 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 SNORA79B-201ENST00000410557 148 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 PAICSP7-201ENST00000419829 962 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC1.76□□□□□ -2.13
CHD9Q3L8U1 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.76□□□□□ -2.13
CHD9Q3L8U1 RNU6-717P-201ENST00000459076 104 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 AP002748.2-201ENST00000528671 348 ntBASIC1.76□□□□□ -2.13
CHD9Q3L8U1 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC1.76□□□□□ -2.13
CHD9Q3L8U1 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC1.76□□□□□ -2.13
CHD9Q3L8U1 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC1.75□□□□□ -2.13
CHD9Q3L8U1 AC245100.2-201ENST00000454544 1679 ntBASIC1.75□□□□□ -2.13
CHD9Q3L8U1 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
CHD9Q3L8U1 RNU6-342P-201ENST00000384521 104 ntBASIC1.75□□□□□ -2.13
CHD9Q3L8U1 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC1.75□□□□□ -2.13
CHD9Q3L8U1 RPL23AP55-201ENST00000498163 452 ntBASIC1.75□□□□□ -2.13
CHD9Q3L8U1 AC109464.2-201ENST00000510242 943 ntBASIC1.75□□□□□ -2.13
CHD9Q3L8U1 AC109471.1-201ENST00000511631 612 ntBASIC1.75□□□□□ -2.13
CHD9Q3L8U1 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
CHD9Q3L8U1 MIR6515-201ENST00000619843 57 ntBASIC1.75□□□□□ -2.13
CHD9Q3L8U1 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
CHD9Q3L8U1 AC093536.2-201ENST00000565257 1406 ntBASIC1.75□□□□□ -2.13
CHD9Q3L8U1 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC1.75□□□□□ -2.13
CHD9Q3L8U1 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC1.75□□□□□ -2.13
CHD9Q3L8U1 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
CHD9Q3L8U1 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
CHD9Q3L8U1 ZNF876P-202ENST00000398732 1485 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AL512430.2-201ENST00000406786 339 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 DHFRP5-201ENST00000406944 564 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC1.74□□□□□ -2.13
CHD9Q3L8U1 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC1.74□□□□□ -2.13
CHD9Q3L8U1 RPL21P134-201ENST00000453468 483 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 RN7SKP49-201ENST00000516675 260 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 PSMA3P-201ENST00000555485 635 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 OR4H12P-201ENST00000556269 907 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AL356575.1-201ENST00000603008 283 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AC107294.3-201ENST00000609211 526 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AC095038.3-201ENST00000634439 195 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.74□□□□□ -2.13
CHD9Q3L8U1 MIR548J-201ENST00000408833 112 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AC002524.1-201ENST00000411687 547 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AL589765.3-201ENST00000446084 462 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 GTF2IP9-201ENST00000502460 301 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 RNU6-964P-201ENST00000516524 69 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 RFPL1S-203ENST00000539579 330 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.74□□□□□ -2.13
CHD9Q3L8U1 RMST_6.1-201ENST00000611980 203 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 AP001148.1-201ENST00000624124 2359 ntBASIC1.74□□□□□ -2.13
CHD9Q3L8U1 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CHD9Q3L8U1 RNU6-1027P-201ENST00000383998 107 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
CHD9Q3L8U1 COX6CP12-201ENST00000446748 202 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 Z99714.1-201ENST00000450463 807 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 ATP5EP1-201ENST00000510257 156 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC1.73□□□□□ -2.13
CHD9Q3L8U1 AC090751.1-201ENST00000566966 267 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 AC073348.1-201ENST00000623002 331 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 AL355578.1-201ENST00000607405 1328 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.73□□□□□ -2.13
CHD9Q3L8U1 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CHD9Q3L8U1 AC244505.5-201ENST00000443639 207 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.73□□□□□ -2.13
CHD9Q3L8U1 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.73□□□□□ -2.13
CHD9Q3L8U1 AC012150.2-201ENST00000621300 544 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 AC098679.5-201ENST00000624394 571 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC1.73□□□□□ -2.13
CHD9Q3L8U1 AC092447.7-201ENST00000422212 1621 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 BTBD10P2-201ENST00000404779 676 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC1.73□□□□□ -2.13
CHD9Q3L8U1 AL590664.1-201ENST00000448065 339 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.73□□□□□ -2.13
CHD9Q3L8U1 USP9YP5-201ENST00000511770 630 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.73□□□□□ -2.13
CHD9Q3L8U1 AC103810.1-201ENST00000579873 453 ntBASIC1.73□□□□□ -2.13
CHD9Q3L8U1 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
CHD9Q3L8U1 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.72□□□□□ -2.13
CHD9Q3L8U1 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
CHD9Q3L8U1 Y_RNA.295-201ENST00000364918 102 ntBASIC1.72□□□□□ -2.13
CHD9Q3L8U1 AC090255.1-201ENST00000495779 349 ntBASIC1.72□□□□□ -2.13
CHD9Q3L8U1 FABP5P6-201ENST00000510588 409 ntBASIC1.72□□□□□ -2.13
CHD9Q3L8U1 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
CHD9Q3L8U1 AGGF1P8-201ENST00000562979 1000 ntBASIC1.72□□□□□ -2.13
CHD9Q3L8U1 AC126118.1-201ENST00000607744 628 ntBASIC1.72□□□□□ -2.13
CHD9Q3L8U1 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC1.72□□□□□ -2.13
CHD9Q3L8U1 RNU1-42P-201ENST00000364033 160 ntBASIC1.72□□□□□ -2.13
CHD9Q3L8U1 RPL7P46-201ENST00000425129 740 ntBASIC1.72□□□□□ -2.13
CHD9Q3L8U1 HMGB1P12-201ENST00000438594 598 ntBASIC1.72□□□□□ -2.13
CHD9Q3L8U1 MIR4285-201ENST00000581001 85 ntBASIC1.72□□□□□ -2.13
CHD9Q3L8U1 AL078603.1-201ENST00000603824 313 ntBASIC1.72□□□□□ -2.13
CHD9Q3L8U1 BX649567.1-201ENST00000642071 1134 ntBASIC1.72□□□□□ -2.13
CHD9Q3L8U1 OR4G1P-203ENST00000641984 1631 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 AF274854.1-201ENST00000413236 615 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 AL645568.3-201ENST00000433683 316 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC1.71□□□□□ -2.14
CHD9Q3L8U1 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms