Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
COL4A3Q01955 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A3Q01955 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.73
COL4A3Q01955 AC073346.2-201ENST00000624724 2058 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 NACAP2-201ENST00000318548 624 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 RPL23AP57-201ENST00000332361 466 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 RNU6-1097P-201ENST00000363586 107 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 RNU6-108P-201ENST00000365558 107 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 RNU6-444P-201ENST00000383988 108 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 MIR559-201ENST00000385188 96 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 ARF4P3-201ENST00000397387 509 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 EIF5P1-201ENST00000400019 1231 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 MTND3P8-201ENST00000412909 339 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A3Q01955 SETP9-201ENST00000423837 832 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 AC019097.1-201ENST00000424783 735 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.27□□□□□ -1.73
COL4A3Q01955 MTCO3P21-201ENST00000430791 643 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.27□□□□□ -1.73
COL4A3Q01955 CEACAMP1-201ENST00000434624 1035 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A3Q01955 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A3Q01955 RPS26P2-201ENST00000440331 348 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.27□□□□□ -1.73
COL4A3Q01955 AC006480.1-201ENST00000449887 378 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 RPL23AP81-201ENST00000455252 467 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A3Q01955 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.27□□□□□ -1.73
COL4A3Q01955 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.27□□□□□ -1.73
COL4A3Q01955 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.27□□□□□ -1.73
COL4A3Q01955 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A3Q01955 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A3Q01955 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.27□□□□□ -1.73
COL4A3Q01955 MIR5684-201ENST00000585074 65 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 AC010525.2-201ENST00000590920 195 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 HMGB2P1-201ENST00000591146 634 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 AC134882.1-201ENST00000603738 1676 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 MTND4P35-201ENST00000604257 1375 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.27□□□□□ -1.73
COL4A3Q01955 SNORD91B-202ENST00000608459 222 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 AC019176.2-201ENST00000611579 315 ntBASIC4.27□□□□□ -1.73
COL4A3Q01955 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
COL4A3Q01955 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.27□□□□□ -1.73
COL4A3Q01955 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.27□□□□□ -1.73
COL4A3Q01955 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.27□□□□□ -1.73
COL4A3Q01955 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A3Q01955 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
COL4A3Q01955 MTND5P3-201ENST00000438536 1800 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A3Q01955 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A3Q01955 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A3Q01955 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
COL4A3Q01955 RNU6-984P-201ENST00000363236 109 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 RNU6-169P-201ENST00000365336 107 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A3Q01955 SNORA51.6-201ENST00000384151 125 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 MIR137-201ENST00000385223 102 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 RNU6-316P-201ENST00000391027 107 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 RNU2-9P-201ENST00000410194 145 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC108032.1-201ENST00000416706 207 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A3Q01955 APOOP2-201ENST00000461561 539 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC104563.1-201ENST00000476147 376 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC090136.1-201ENST00000520009 240 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 YPEL5P3-201ENST00000547227 352 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC105429.2-201ENST00000610567 517 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 uc_338.5-201ENST00000611839 155 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC241377.1-201ENST00000619797 406 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC079684.1-201ENST00000621405 437 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC140113.4-201ENST00000622087 222 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC091905.2-201ENST00000623143 306 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC009093.8-201ENST00000641769 292 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 MAPK10-286ENST00000641208 8747 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A3Q01955 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
COL4A3Q01955 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A3Q01955 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A3Q01955 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A3Q01955 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A3Q01955 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 ZNF285B-201ENST00000561698 1767 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms