Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AP001922.4-201ENST00000526967 290 ntBASIC5.24□□□□□ -1.57
LIG3P49916 RANP3-201ENST00000530970 276 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG3P49916 OR1F2P-201ENST00000570470 933 ntBASIC5.24□□□□□ -1.57
LIG3P49916 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LIG3P49916 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
LIG3P49916 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG3P49916 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG3P49916 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG3P49916 AC092747.3-201ENST00000603769 301 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AC009597.2-201ENST00000604659 592 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AC245389.1-201ENST00000605141 529 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AC080078.3-201ENST00000605407 463 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG3P49916 AL627230.1-201ENST00000613077 211 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG3P49916 AC135068.12-201ENST00000637370 931 ntBASIC5.24□□□□□ -1.57
LIG3P49916 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LIG3P49916 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG3P49916 SCARNA15-201ENST00000607520 4325 ntBASIC5.24□□□□□ -1.57
LIG3P49916 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.24□□□□□ -1.57
LIG3P49916 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG3P49916 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LIG3P49916 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG3P49916 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.24□□□□□ -1.57
LIG3P49916 API5-210ENST00000534600 1760 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG3P49916 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG3P49916 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.23□□□□□ -1.57
LIG3P49916 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIG3P49916 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.23□□□□□ -1.57
LIG3P49916 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.23□□□□□ -1.57
LIG3P49916 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
LIG3P49916 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIG3P49916 MIR369-201ENST00000362155 70 ntBASIC5.23□□□□□ -1.57
LIG3P49916 Y_RNA.167-201ENST00000363735 109 ntBASIC5.23□□□□□ -1.57
LIG3P49916 SNORA74A-201ENST00000364089 198 ntBASIC5.23□□□□□ -1.57
LIG3P49916 Y_RNA.339-201ENST00000365325 102 ntBASIC5.23□□□□□ -1.57
LIG3P49916 Y_RNA.422-201ENST00000384054 114 ntBASIC5.23□□□□□ -1.57
LIG3P49916 RNY4P36-201ENST00000391116 96 ntBASIC5.23□□□□□ -1.57
LIG3P49916 GLULP6-201ENST00000399502 913 ntBASIC5.23□□□□□ -1.57
LIG3P49916 MIR548K-201ENST00000408406 116 ntBASIC5.23□□□□□ -1.57
LIG3P49916 GJA6P-201ENST00000415117 1042 ntBASIC5.23□□□□□ -1.57
LIG3P49916 EI24P4-201ENST00000423683 1078 ntBASIC5.23□□□□□ -1.57
LIG3P49916 FABP7P2-201ENST00000429946 379 ntBASIC5.23□□□□□ -1.57
LIG3P49916 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC5.23□□□□□ -1.57
LIG3P49916 RPS29P10-201ENST00000439197 166 ntBASIC5.23□□□□□ -1.57
LIG3P49916 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC5.23□□□□□ -1.57
LIG3P49916 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC5.23□□□□□ -1.57
LIG3P49916 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.23□□□□□ -1.57
LIG3P49916 AC027575.1-201ENST00000481064 460 ntBASIC5.23□□□□□ -1.57
LIG3P49916 AC090686.1-201ENST00000481577 749 ntBASIC5.23□□□□□ -1.57
LIG3P49916 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC5.23□□□□□ -1.57
LIG3P49916 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC5.23□□□□□ -1.57
LIG3P49916 AC021146.3-201ENST00000511911 260 ntBASIC5.23□□□□□ -1.57
LIG3P49916 RNA5SP249-201ENST00000516127 99 ntBASIC5.23□□□□□ -1.57
LIG3P49916 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LIG3P49916 AC006116.3-201ENST00000592968 361 ntBASIC5.23□□□□□ -1.57
LIG3P49916 Z82243.1-201ENST00000609432 473 ntBASIC5.23□□□□□ -1.57
LIG3P49916 MIR7155-201ENST00000615925 56 ntBASIC5.23□□□□□ -1.57
LIG3P49916 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.23□□□□□ -1.57
LIG3P49916 MIR6130-201ENST00000619419 109 ntBASIC5.23□□□□□ -1.57
LIG3P49916 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC5.23□□□□□ -1.57
LIG3P49916 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.23□□□□□ -1.57
LIG3P49916 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
LIG3P49916 MTCO1P24-201ENST00000515438 1558 ntBASIC5.23□□□□□ -1.57
LIG3P49916 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIG3P49916 AC103710.2-202ENST00000641454 2853 ntBASIC5.23□□□□□ -1.57
LIG3P49916 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
LIG3P49916 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.23□□□□□ -1.57
LIG3P49916 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.23□□□□□ -1.57
LIG3P49916 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIG3P49916 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
LIG3P49916 SCN1A-220ENST00000641603 12506 ntBASIC5.23□□□□□ -1.57
LIG3P49916 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIG3P49916 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIG3P49916 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.22□□□□□ -1.57
LIG3P49916 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LIG3P49916 AC104118.1-201ENST00000607625 1589 ntBASIC5.22□□□□□ -1.57
LIG3P49916 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIG3P49916 RNU6-263P-201ENST00000363811 107 ntBASIC5.22□□□□□ -1.57
LIG3P49916 RNA5SP90-201ENST00000364801 99 ntBASIC5.22□□□□□ -1.57
LIG3P49916 RN7SKP153-201ENST00000365026 316 ntBASIC5.22□□□□□ -1.57
LIG3P49916 SNORA70E-201ENST00000384492 135 ntBASIC5.22□□□□□ -1.57
LIG3P49916 RNU6-738P-201ENST00000384531 106 ntBASIC5.22□□□□□ -1.57
LIG3P49916 RNU6-550P-201ENST00000391057 101 ntBASIC5.22□□□□□ -1.57
LIG3P49916 OFD1P1Y-201ENST00000411756 1225 ntBASIC5.22□□□□□ -1.57
LIG3P49916 POLHP1-201ENST00000411806 470 ntBASIC5.22□□□□□ -1.57
LIG3P49916 AL591848.1-201ENST00000413092 322 ntBASIC5.22□□□□□ -1.57
LIG3P49916 AC074085.1-201ENST00000413598 418 ntBASIC5.22□□□□□ -1.57
LIG3P49916 RPL30P2-201ENST00000414021 291 ntBASIC5.22□□□□□ -1.57
LIG3P49916 RPL26P29-201ENST00000415623 438 ntBASIC5.22□□□□□ -1.57
LIG3P49916 AC016712.1-201ENST00000431088 378 ntBASIC5.22□□□□□ -1.57
LIG3P49916 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC5.22□□□□□ -1.57
LIG3P49916 RPS3AP52-201ENST00000435639 297 ntBASIC5.22□□□□□ -1.57
LIG3P49916 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.22□□□□□ -1.57
LIG3P49916 MTCO3P45-201ENST00000443036 613 ntBASIC5.22□□□□□ -1.57
LIG3P49916 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.22□□□□□ -1.57
LIG3P49916 AC020550.1-201ENST00000447385 163 ntBASIC5.22□□□□□ -1.57
LIG3P49916 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.22□□□□□ -1.57
LIG3P49916 AL356981.1-201ENST00000454879 684 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms