Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC023347.2-201ENST00000433994 462 ntBASIC2.65□□□□□ -1.99
COL18A1P39060 ELOCP13-201ENST00000443934 329 ntBASIC2.65□□□□□ -1.99
COL18A1P39060 RPL23AP44-201ENST00000482216 473 ntBASIC2.65□□□□□ -1.99
COL18A1P39060 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.65□□□□□ -1.99
COL18A1P39060 AC018754.1-201ENST00000607486 925 ntBASIC2.65□□□□□ -1.99
COL18A1P39060 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.65□□□□□ -1.99
COL18A1P39060 AC009032.1-201ENST00000617574 431 ntBASIC2.65□□□□□ -1.99
COL18A1P39060 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC2.65□□□□□ -1.99
COL18A1P39060 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL18A1P39060 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL18A1P39060 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC2.64□□□□□ -1.99
COL18A1P39060 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC2.64□□□□□ -1.99
COL18A1P39060 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL18A1P39060 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC2.64□□□□□ -1.99
COL18A1P39060 FO393419.3-201ENST00000428741 282 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 SAR1AP4-201ENST00000429225 591 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC2.64□□□□□ -1.99
COL18A1P39060 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.64□□□□□ -1.99
COL18A1P39060 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC2.64□□□□□ -1.99
COL18A1P39060 RNU6-551P-201ENST00000516661 103 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 AC093331.1-201ENST00000521474 169 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 LLPHP1-201ENST00000603571 367 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 MFSD8-245ENST00000641743 948 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL18A1P39060 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL18A1P39060 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
COL18A1P39060 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.64□□□□□ -1.99
COL18A1P39060 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.64□□□□□ -1.99
COL18A1P39060 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL18A1P39060 MIR378A-201ENST00000362177 66 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL18A1P39060 SDR42E1P3-201ENST00000438345 502 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
COL18A1P39060 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC2.64□□□□□ -1.99
COL18A1P39060 AP000705.1-201ENST00000454567 350 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 AC146507.1-201ENST00000468335 354 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 AC107398.1-201ENST00000486904 505 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 MTND5P21-201ENST00000531961 522 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 AC012531.5-201ENST00000611375 151 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 Y_RNA.783-201ENST00000613546 102 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 U6.48-201ENST00000618523 106 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 AC002064.3-201ENST00000623448 346 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 AC010297.1-201ENST00000623948 149 ntBASIC2.64□□□□□ -1.99
COL18A1P39060 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
COL18A1P39060 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.63□□□□□ -1.99
COL18A1P39060 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.63□□□□□ -1.99
COL18A1P39060 NDUFB4P6-201ENST00000436819 366 ntBASIC2.63□□□□□ -1.99
COL18A1P39060 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.63□□□□□ -1.99
COL18A1P39060 TRAV31-201ENST00000502780 342 ntBASIC2.63□□□□□ -1.99
COL18A1P39060 MTCO1P30-201ENST00000515244 580 ntBASIC2.63□□□□□ -1.99
COL18A1P39060 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.63□□□□□ -1.99
COL18A1P39060 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.63□□□□□ -1.99
COL18A1P39060 PTP4A1P6-201ENST00000531034 478 ntBASIC2.63□□□□□ -1.99
COL18A1P39060 AP004242.1-201ENST00000533701 349 ntBASIC2.63□□□□□ -1.99
COL18A1P39060 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC2.63□□□□□ -1.99
COL18A1P39060 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.63□□□□□ -1.99
COL18A1P39060 SNRPGP19-201ENST00000603826 189 ntBASIC2.63□□□□□ -1.99
COL18A1P39060 AC022079.2-201ENST00000619739 566 ntBASIC2.63□□□□□ -1.99
COL18A1P39060 AC073348.1-201ENST00000623002 331 ntBASIC2.63□□□□□ -1.99
COL18A1P39060 AL049737.1-201ENST00000413920 1403 ntBASIC2.63□□□□□ -1.99
COL18A1P39060 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL18A1P39060 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL18A1P39060 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC2.62□□□□□ -1.99
COL18A1P39060 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
COL18A1P39060 RNY1P10-201ENST00000363268 113 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 RNU6-356P-201ENST00000384140 107 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 MIR153-1-201ENST00000384914 90 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 Z86062.1-201ENST00000406773 777 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC2.62□□□□□ -1.99
COL18A1P39060 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC2.62□□□□□ -1.99
COL18A1P39060 ARL5AP2-201ENST00000444698 533 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 AP000852.1-201ENST00000472460 573 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 AC007182.2-201ENST00000489251 402 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 AC025459.1-201ENST00000504072 156 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 HMGB1P46-201ENST00000520062 610 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.62□□□□□ -1.99
COL18A1P39060 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.62□□□□□ -1.99
COL18A1P39060 CENPUP2-201ENST00000555897 1186 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 AC006270.2-201ENST00000578523 652 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 AP001542.1-201ENST00000591314 200 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 AC069304.3-201ENST00000603938 1084 ntBASIC2.62□□□□□ -1.99
COL18A1P39060 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
COL18A1P39060 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.62□□□□□ -1.99
COL18A1P39060 SNORA27.3-201ENST00000364937 134 ntBASIC2.61□□□□□ -1.99
COL18A1P39060 RNA5SP270-201ENST00000411361 118 ntBASIC2.61□□□□□ -1.99
COL18A1P39060 AC004022.2-201ENST00000413824 193 ntBASIC2.61□□□□□ -1.99
COL18A1P39060 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC2.61□□□□□ -1.99
COL18A1P39060 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC2.61□□□□□ -1.99
COL18A1P39060 AC007687.1-201ENST00000602704 304 ntBASIC2.61□□□□□ -1.99
COL18A1P39060 AC108479.2-201ENST00000617314 601 ntBASIC2.61□□□□□ -1.99
COL18A1P39060 U6.98-201ENST00000637157 84 ntBASIC2.61□□□□□ -1.99
COL18A1P39060 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.61□□□□□ -1.99
COL18A1P39060 FAM35CP-201ENST00000554755 2470 ntBASIC2.61□□□□□ -1.99
COL18A1P39060 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
COL18A1P39060 HMGB1P13-201ENST00000406019 642 ntBASIC2.61□□□□□ -1.99
COL18A1P39060 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2.61□□□□□ -1.99
COL18A1P39060 ZNF92P1Y-201ENST00000415010 1191 ntBASIC2.61□□□□□ -1.99
COL18A1P39060 AL445685.2-201ENST00000422551 342 ntBASIC2.61□□□□□ -1.99
COL18A1P39060 AC129850.1-201ENST00000436203 508 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms