Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC010265.1-201ENST00000513509 211 ntBASIC3.27□□□□□ -1.89
PTPN4P29074 RNU6-27P-201ENST00000516146 107 ntBASIC3.27□□□□□ -1.89
PTPN4P29074 IGKV2-26-201ENST00000518305 343 ntBASIC3.27□□□□□ -1.89
PTPN4P29074 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.27□□□□□ -1.89
PTPN4P29074 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.27□□□□□ -1.89
PTPN4P29074 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.27□□□□□ -1.89
PTPN4P29074 RPL21P12-201ENST00000559810 515 ntBASIC3.27□□□□□ -1.89
PTPN4P29074 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PTPN4P29074 FAM60BP-201ENST00000578364 658 ntBASIC3.27□□□□□ -1.89
PTPN4P29074 MIR4506-201ENST00000584693 77 ntBASIC3.27□□□□□ -1.89
PTPN4P29074 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PTPN4P29074 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.27□□□□□ -1.89
PTPN4P29074 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.27□□□□□ -1.89
PTPN4P29074 AL078595.3-201ENST00000623815 1166 ntBASIC3.27□□□□□ -1.89
PTPN4P29074 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.27□□□□□ -1.89
PTPN4P29074 MIR1322-201ENST00000638013 71 ntBASIC3.27□□□□□ -1.89
PTPN4P29074 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PTPN4P29074 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.27□□□□□ -1.89
PTPN4P29074 AL356473.1-201ENST00000406203 1408 ntBASIC3.27□□□□□ -1.89
PTPN4P29074 MAPK10-362ENST00000641864 4484 ntBASIC3.27□□□□□ -1.89
PTPN4P29074 CUL1P1-201ENST00000509510 2425 ntBASIC3.27□□□□□ -1.89
PTPN4P29074 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PTPN4P29074 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.26□□□□□ -1.89
PTPN4P29074 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.26□□□□□ -1.89
PTPN4P29074 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.26□□□□□ -1.89
PTPN4P29074 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.26□□□□□ -1.89
PTPN4P29074 SNORA46-201ENST00000384762 135 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 NDUFB4P4-201ENST00000404822 243 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 FAT1P1-201ENST00000406588 507 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 AL590084.1-201ENST00000407885 387 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 BX323014.1-201ENST00000412876 237 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.26□□□□□ -1.89
PTPN4P29074 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 RPL21P40-201ENST00000428586 483 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 RPL23AP69-201ENST00000431134 458 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 USP9YP24-201ENST00000434374 697 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 CST9LP2-201ENST00000437612 320 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 EEF1A1P39-201ENST00000440791 250 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.26□□□□□ -1.89
PTPN4P29074 USP9YP17-201ENST00000444617 696 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 AC092155.2-201ENST00000454675 477 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 HMGB1P25-201ENST00000468402 607 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 RPS15AP17-201ENST00000470598 390 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 AC110760.3-202ENST00000515177 371 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN4P29074 AP005205.1-201ENST00000563503 508 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 AC069304.2-201ENST00000605154 435 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 AC109809.1-201ENST00000619665 545 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.26□□□□□ -1.89
PTPN4P29074 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
PTPN4P29074 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.26□□□□□ -1.89
PTPN4P29074 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PTPN4P29074 AC099786.3-201ENST00000565735 1410 ntBASIC3.26□□□□□ -1.89
PTPN4P29074 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PTPN4P29074 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
PTPN4P29074 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AL645937.1-201ENST00000641739 1652 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AL390862.1-201ENST00000635467 1469 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 SNRPEP3-201ENST00000338402 276 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 RNU4-68P-201ENST00000364314 141 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 SNORA48.8-201ENST00000391324 134 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 TAF9BP1-201ENST00000396646 746 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 SNRPEP2-201ENST00000397592 279 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 HMGB1P17-201ENST00000403495 628 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 RN7SKP58-201ENST00000411010 305 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PTPN4P29074 AL356320.2-201ENST00000417263 507 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AL137014.1-201ENST00000420490 1226 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AC019178.2-201ENST00000423595 505 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 OR2B8P-201ENST00000432841 938 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN4P29074 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN4P29074 MTCO3P11-201ENST00000455103 774 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 BTF3P5-201ENST00000457252 467 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AC011979.1-201ENST00000472300 483 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.25□□□□□ -1.89
PTPN4P29074 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PTPN4P29074 RPS29P2-201ENST00000479278 136 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.25□□□□□ -1.89
PTPN4P29074 AC006483.1-201ENST00000487308 313 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 OR4G11P-201ENST00000492842 939 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN4P29074 FCF1P8-201ENST00000510322 597 ntBASIC3.25□□□□□ -1.89
PTPN4P29074 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.25□□□□□ -1.89
PTPN4P29074 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN4P29074 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.25□□□□□ -1.89
PTPN4P29074 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN4P29074 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms