Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL8A1P27658 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL8A1P27658 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.11□□□□□ -1.59
COL8A1P27658 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
COL8A1P27658 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL8A1P27658 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.11□□□□□ -1.59
COL8A1P27658 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
COL8A1P27658 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL8A1P27658 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL8A1P27658 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL8A1P27658 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL8A1P27658 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.1□□□□□ -1.59
COL8A1P27658 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.1□□□□□ -1.59
COL8A1P27658 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
COL8A1P27658 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.1□□□□□ -1.59
COL8A1P27658 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.1□□□□□ -1.59
COL8A1P27658 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
COL8A1P27658 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL8A1P27658 SMIM11P1-201ENST00000369586 178 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.1□□□□□ -1.59
COL8A1P27658 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL8A1P27658 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
COL8A1P27658 RNU1-106P-201ENST00000384382 164 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL8A1P27658 AL139039.1-201ENST00000401900 692 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 AL109941.1-201ENST00000401925 229 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 RNU2-52P-201ENST00000410680 190 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC5.1□□□□□ -1.59
COL8A1P27658 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.1□□□□□ -1.59
COL8A1P27658 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC5.1□□□□□ -1.59
COL8A1P27658 AL159987.2-201ENST00000432754 307 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 RPS26P56-201ENST00000444468 240 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC5.1□□□□□ -1.59
COL8A1P27658 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.1□□□□□ -1.59
COL8A1P27658 AC008264.1-201ENST00000447612 367 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 AC092967.1-201ENST00000449016 481 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 RPS29P33-201ENST00000456717 146 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 RN7SL51P-201ENST00000468230 285 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 RPS29P22-201ENST00000472363 168 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.1□□□□□ -1.59
COL8A1P27658 RN7SL583P-201ENST00000475692 287 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 AC022133.1-201ENST00000490961 571 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 HSPA8P4-201ENST00000511877 1920 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.1□□□□□ -1.59
COL8A1P27658 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC5.1□□□□□ -1.59
COL8A1P27658 HMGN2P47-201ENST00000559378 272 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 RPL10P14-201ENST00000565265 298 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL8A1P27658 AC115085.1-201ENST00000588924 229 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 AC010624.4-201ENST00000597606 1351 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 AC241377.1-201ENST00000619797 406 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 AP001541.1-201ENST00000623322 1904 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC5.1□□□□□ -1.59
COL8A1P27658 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC5.1□□□□□ -1.59
COL8A1P27658 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL8A1P27658 AC007159.1-201ENST00000566529 4706 ntBASIC5.1□□□□□ -1.59
COL8A1P27658 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL8A1P27658 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL8A1P27658 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.1□□□□□ -1.59
COL8A1P27658 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL8A1P27658 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL8A1P27658 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.1□□□□□ -1.59
COL8A1P27658 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL8A1P27658 AP000432.2-201ENST00000624164 2048 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC5.09□□□□□ -1.59
COL8A1P27658 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL8A1P27658 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
COL8A1P27658 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL8A1P27658 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
COL8A1P27658 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL8A1P27658 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL8A1P27658 RNU4-90P-201ENST00000362773 141 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 MIR433-201ENST00000384837 93 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 MIR23A-201ENST00000385245 73 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL8A1P27658 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL8A1P27658 AC007568.1-201ENST00000422912 471 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 AL133173.1-201ENST00000423458 397 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 EI24P4-201ENST00000423683 1078 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC5.09□□□□□ -1.59
COL8A1P27658 PRUNEP1-201ENST00000425846 705 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 RPL36P19-201ENST00000430744 301 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL8A1P27658 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC5.09□□□□□ -1.59
COL8A1P27658 RN7SL738P-201ENST00000470264 297 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 RPL30P10-201ENST00000488148 337 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 RPL30P1-201ENST00000488676 339 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC5.09□□□□□ -1.59
COL8A1P27658 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.09□□□□□ -1.59
COL8A1P27658 RNU5F-8P-201ENST00000515941 111 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC5.09□□□□□ -1.59
COL8A1P27658 AC090151.1-201ENST00000520784 730 ntBASIC5.09□□□□□ -1.59
COL8A1P27658 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC5.09□□□□□ -1.59
COL8A1P27658 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.09□□□□□ -1.59
COL8A1P27658 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.09□□□□□ -1.59
COL8A1P27658 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.09□□□□□ -1.59
COL8A1P27658 AC233702.2-202ENST00000562547 291 ntBASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms